Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BIN2P1-201ENST00000504996 1530 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC8.6□□□□□ -1.03
HMGB1P09429 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC8.6□□□□□ -1.03
HMGB1P09429 OSBPL9P1-201ENST00000604744 1469 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 RNU6-1320P-201ENST00000390838 107 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RNU6-1269P-201ENST00000391139 107 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 CXADRP1-201ENST00000398098 1095 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 AC007064.3-201ENST00000422608 359 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 BX119917.1-201ENST00000432517 502 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC8.6□□□□□ -1.03
HMGB1P09429 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC8.6□□□□□ -1.03
HMGB1P09429 PSPC1P2-201ENST00000455130 225 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RNU6-599P-201ENST00000459383 107 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RNU6-1193P-201ENST00000459461 107 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RN7SL308P-201ENST00000464971 297 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RN7SL282P-201ENST00000479676 297 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 PFN2-217ENST00000498307 556 ntTSL 4 BASIC8.6□□□□□ -1.03
HMGB1P09429 AC008967.1-201ENST00000504843 163 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 OR7E163P-201ENST00000505943 894 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC8.6□□□□□ -1.03
HMGB1P09429 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 EGLN3P1-201ENST00000541727 720 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 AC008147.3-201ENST00000548666 354 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 HIGD1AP9-201ENST00000550710 279 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 HNRNPA1P71-201ENST00000559135 950 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC8.6□□□□□ -1.03
HMGB1P09429 MIR3135A-201ENST00000578460 77 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC8.6□□□□□ -1.03
HMGB1P09429 CXADRP3-202ENST00000617265 1100 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RNU6-368P-201ENST00000620928 107 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 RNU6-538P-201ENST00000622329 107 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 AC105105.5-201ENST00000622635 1294 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 CASC19-232ENST00000641480 1244 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 AL596275.2-203ENST00000641951 371 ntBASIC8.6□□□□□ -1.03
HMGB1P09429 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
HMGB1P09429 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HMGB1P09429 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
HMGB1P09429 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 FGG-201ENST00000336098 1659 ntTSL 2 BASIC8.59□□□□□ -1.03
HMGB1P09429 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC8.59□□□□□ -1.03
HMGB1P09429 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC8.59□□□□□ -1.03
HMGB1P09429 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 AC005614.1-201ENST00000598952 3653 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
HMGB1P09429 RNA5SP396-201ENST00000364834 120 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 NRIR-201ENST00000366140 799 ntTSL 3 BASIC8.59□□□□□ -1.03
HMGB1P09429 AL390760.1-201ENST00000366188 410 ntTSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 ARMCX7P-201ENST00000372828 562 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
HMGB1P09429 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC8.59□□□□□ -1.03
HMGB1P09429 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 NPM1P26-201ENST00000426339 738 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC8.59□□□□□ -1.03
HMGB1P09429 SEPT7P3-201ENST00000455017 621 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 AC016489.1-201ENST00000461109 375 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 TAAR3P-201ENST00000466706 1078 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 TAAR3P-202ENST00000481759 1025 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 RN7SL152P-201ENST00000484176 298 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 RN7SL445P-201ENST00000495609 293 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC8.59□□□□□ -1.03
HMGB1P09429 AC068631.3-201ENST00000538831 225 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC8.59□□□□□ -1.03
HMGB1P09429 AP001554.1-201ENST00000604533 376 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 OR51C1P-201ENST00000608504 942 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 AL121809.2-201ENST00000613169 341 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 uc_338.33-201ENST00000614988 170 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 EAPP-205ENST00000618169 1237 ntTSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 AC087893.2-201ENST00000623272 255 ntBASIC8.59□□□□□ -1.03
HMGB1P09429 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC8.59□□□□□ -1.03
HMGB1P09429 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC8.59□□□□□ -1.03
HMGB1P09429 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
HMGB1P09429 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms