Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC068631.3-201ENST00000538831 225 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 MRPS21P9-201ENST00000571150 257 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 OR7E94P-202ENST00000601375 790 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AL359195.2-201ENST00000623657 4412 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 ZNF710-AS1-202ENST00000620791 2133 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 OR5M2P-202ENST00000641241 4242 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AP005139.1-201ENST00000580702 1647 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 IARS-205ENST00000443024 4341 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 FAM20A-207ENST00000619787 2798 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AL390726.6-202ENST00000635962 1365 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 RPL10P16-201ENST00000325000 645 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 RNU1-38P-201ENST00000362817 144 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 RNU1-24P-201ENST00000364285 165 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 RN7SKP62-201ENST00000384539 329 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 SULT1C4-202ENST00000409309 1045 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC093107.1-201ENST00000422772 609 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 OR5P4P-201ENST00000424698 917 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 HMGN1P6-201ENST00000438508 291 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC092421.1-201ENST00000448148 418 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 TCEAL4P1-201ENST00000453620 588 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 PSPC1P2-201ENST00000455130 225 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 SEPT14P1-201ENST00000458703 648 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC131233.1-201ENST00000479200 955 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC096743.1-201ENST00000485172 319 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 RN7SL182P-201ENST00000496499 300 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 LINC01085-203ENST00000511195 326 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 OSTC-204ENST00000512478 663 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC111000.1-201ENST00000514545 713 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC018523.1-201ENST00000534211 512 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 OR5BK1P-201ENST00000550421 823 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 OR4N3P-201ENST00000559395 818 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 SMIM11B-203ENST00000622934 1193 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC135068.4-201ENST00000622949 925 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC087893.2-201ENST00000623272 255 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.1□□□□□ -1.43
NKX3-1Q99801 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 AC092646.2-201ENST00000431242 2095 ntBASIC6.1□□□□□ -1.43
NKX3-1Q99801 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NKX3-1Q99801 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.09□□□□□ -1.43
NKX3-1Q99801 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
NKX3-1Q99801 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms