Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC139495.1-201ENST00000510264 1073 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 AC021820.1-201ENST00000525564 808 ntBASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 AP003033.2-201ENST00000528901 805 ntBASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 ULK4P2-202ENST00000564187 492 ntBASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 Z99289.1-201ENST00000585373 807 ntTSL 3 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 RN7SL126P-201ENST00000616400 299 ntBASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.14□□□□□ -1.27
HDDC3Q8N4P3 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC061975.5-201ENST00000584928 1441 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 RPL24P7-201ENST00000399435 453 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 RN7SKP254-201ENST00000410685 310 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC006509.1-201ENST00000420788 634 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 UQCRHP1-204ENST00000424609 274 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 RPL5P6-201ENST00000425640 886 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 PFN2-213ENST00000494827 793 ntTSL 4 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC114324.2-202ENST00000503812 134 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 SCARNA6-201ENST00000515982 265 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC079866.1-201ENST00000534985 1220 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 OR5BK1P-201ENST00000550421 823 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 MIR4271-201ENST00000582451 67 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC137695.2-201ENST00000603123 754 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AL359091.2-201ENST00000609303 556 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC073263.3-201ENST00000624449 858 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC127071.1-201ENST00000624997 712 ntBASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 NELL2-217ENST00000551601 3148 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
HDDC3Q8N4P3 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC090181.3-201ENST00000624777 1514 ntBASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 RN7SL492P-201ENST00000460700 295 ntBASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 B4GALNT2P1-201ENST00000508857 307 ntBASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms