Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
HMGB1P09429 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
HMGB1P09429 AC244452.1-201ENST00000413798 141 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 FTOP1-201ENST00000419363 861 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 AL357632.1-201ENST00000426688 643 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 RPL5P27-201ENST00000437011 881 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 RAB28P3-201ENST00000448325 597 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 AL355472.1-201ENST00000451795 575 ntTSL 5 BASIC8.66□□□□□ -1.02
HMGB1P09429 NUCKS1P1-201ENST00000452067 703 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 RPL7P17-201ENST00000470927 724 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC8.66□□□□□ -1.02
HMGB1P09429 AK4P6-201ENST00000505168 528 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 AC122710.2-201ENST00000506093 596 ntTSL 4 BASIC8.66□□□□□ -1.02
HMGB1P09429 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC8.66□□□□□ -1.02
HMGB1P09429 SEC11B-201ENST00000518383 499 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 AC244502.1-205ENST00000535351 571 ntTSL 4 BASIC8.66□□□□□ -1.02
HMGB1P09429 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC8.66□□□□□ -1.02
HMGB1P09429 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC8.66□□□□□ -1.02
HMGB1P09429 AC092368.2-201ENST00000565911 600 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 LINC01892-201ENST00000579141 507 ntTSL 3 BASIC8.66□□□□□ -1.02
HMGB1P09429 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC8.66□□□□□ -1.02
HMGB1P09429 AP005329.3-201ENST00000609924 686 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 AC015722.2-201ENST00000622210 551 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
HMGB1P09429 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC8.66□□□□□ -1.02
HMGB1P09429 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 AC006116.1-201ENST00000587908 2171 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 HLF-210ENST00000575345 3589 ntTSL 2 BASIC8.65□□□□□ -1.02
HMGB1P09429 AL356317.1-201ENST00000396110 1436 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 RNU6-819P-201ENST00000364116 107 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 C1QTNF9B-203ENST00000382145 888 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 RPL24-201ENST00000394077 623 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC8.65□□□□□ -1.02
HMGB1P09429 DHFRP5-201ENST00000406944 564 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 RNU6-564P-201ENST00000410983 104 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 PPIAP30-201ENST00000415473 519 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 AC091492.1-201ENST00000419844 272 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC106901.1-201ENST00000425086 698 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC104698.1-201ENST00000435671 276 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 ATP5G1P6-201ENST00000451206 412 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 ZNF32-AS1-201ENST00000453284 434 ntTSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC8.65□□□□□ -1.02
HMGB1P09429 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 VN1R6P-201ENST00000458417 907 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 AC008040.4-201ENST00000494834 768 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 EIF3KP1-201ENST00000513279 656 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 CRADD-210ENST00000552033 622 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC8.65□□□□□ -1.02
HMGB1P09429 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 AL050343.1-203ENST00000586761 1290 ntTSL 3 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC005154.6-201ENST00000598361 687 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 AC012213.4-201ENST00000606457 354 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC8.65□□□□□ -1.02
HMGB1P09429 PART1_3.1-201ENST00000619680 131 ntBASIC8.65□□□□□ -1.02
HMGB1P09429 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
HMGB1P09429 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC8.65□□□□□ -1.02
HMGB1P09429 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
HMGB1P09429 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
HMGB1P09429 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
HMGB1P09429 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HMGB1P09429 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HMGB1P09429 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
HMGB1P09429 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
HMGB1P09429 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HMGB1P09429 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
HMGB1P09429 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC8.64□□□□□ -1.03
HMGB1P09429 CASP4-201ENST00000393150 1340 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms