Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
HLA-DOAP06340 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC8.31□□□□□ -1.08
HLA-DOAP06340 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC8.31□□□□□ -1.08
HLA-DOAP06340 SLC22A9-201ENST00000279178 2343 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-DOAP06340 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-DOAP06340 TPTE2P2-201ENST00000403471 1466 ntBASIC8.31□□□□□ -1.08
HLA-DOAP06340 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-DOAP06340 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
HLA-DOAP06340 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC005831.1-201ENST00000624384 1697 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 NUMB-211ENST00000554521 1406 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 SUMO2P13-201ENST00000403109 272 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 OR51P1P-201ENST00000447547 942 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 RN7SKP198-201ENST00000459286 306 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 RPL5P33-201ENST00000487833 905 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 IGLVVII-41-1-201ENST00000518405 151 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC013283.1-201ENST00000557282 492 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC026790.2-201ENST00000606282 430 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC073857.1-201ENST00000625082 1054 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC8.3□□□□□ -1.08
HLA-DOAP06340 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 COL6A4P1-202ENST00000487147 4317 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 ATP5BP1-201ENST00000411980 1574 ntBASIC8.3□□□□□ -1.08
HLA-DOAP06340 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
HLA-DOAP06340 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 MAGEB16-205ENST00000399992 1734 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 LINC02035-201ENST00000610128 5476 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 RN7SKP191-201ENST00000364713 306 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 RNA5SP172-201ENST00000365061 118 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 RBBP4P4-201ENST00000398588 1289 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 RPL17P17-201ENST00000419491 557 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 RPEP4-201ENST00000437636 602 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 UOX-201ENST00000471089 899 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 RN7SL259P-201ENST00000478499 253 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 B3GNTL1P1-201ENST00000509174 289 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 IGKV2D-38-201ENST00000518423 240 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC036176.3-201ENST00000602456 418 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 AP005329.3-201ENST00000609924 686 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 5S_rRNA.23-201ENST00000612086 102 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 AP005212.3-201ENST00000619964 528 ntBASIC8.29□□□□□ -1.08
HLA-DOAP06340 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC8.29□□□□□ -1.08
HLA-DOAP06340 CLCN5-204ENST00000376108 2660 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-DOAP06340 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms