Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPL12P28-201ENST00000430852 489 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC013439.1-201ENST00000449965 1239 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 RPS20P4-201ENST00000461659 355 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 FAM74A1-201ENST00000465257 623 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC021205.1-201ENST00000468797 348 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC079080.1-201ENST00000479841 822 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC021491.1-201ENST00000502300 349 ntTSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 MTND4LP2-201ENST00000502312 285 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 GAPDHP38-201ENST00000503632 1002 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 CCL26-201ENST00000005180 526 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC023538.1-201ENST00000534576 736 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AL355076.3-201ENST00000555838 587 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 FXYD6P1-201ENST00000604857 285 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 NUDT13-208ENST00000617744 928 ntTSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC106782.7-201ENST00000624024 418 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC133555.5-201ENST00000624430 418 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 LINC01125-248ENST00000627284 700 ntAPPRIS ALT2 TSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 LINC01206-228ENST00000628718 871 ntTSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 MTND2P41-201ENST00000637599 773 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 MR1-205ENST00000434571 7479 ntTSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 LINC02059-202ENST00000506471 2094 ntTSL 2 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 TMEM99-204ENST00000622451 2073 ntAPPRIS P2 TSL 2 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 RAD51B-212ENST00000488612 1550 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AP002759.1-201ENST00000526840 1571 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 PCDH18-205ENST00000511115 1331 ntTSL 2 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC103760.1-201ENST00000521326 1486 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 IGSF22-205ENST00000513874 4284 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 DCAF6-202ENST00000367840 3349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 NEDD1-201ENST00000266742 4046 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 OR1G1-201ENST00000328890 998 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC068389.3-201ENST00000373384 529 ntTSL 4 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RNVU1-15-201ENST00000384476 165 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 MTCO2P31-201ENST00000402702 684 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL035698.1-201ENST00000405812 564 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 IFNA12P-201ENST00000413147 571 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 DHFRP2-201ENST00000414224 547 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL161725.1-203ENST00000415004 1081 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RBM22P7-201ENST00000421321 280 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 HSPE1P16-201ENST00000426640 348 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RPS21P1-201ENST00000434479 247 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC002553.1-201ENST00000442828 802 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 LINC01015-204ENST00000445296 399 ntTSL 3 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL136115.1-201ENST00000447478 517 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC007879.2-201ENST00000454444 551 ntTSL 4 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RPL7P32-201ENST00000457119 744 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RPL6P9-201ENST00000466502 859 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL122013.1-201ENST00000473054 801 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC005017.1-201ENST00000482002 490 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 VBP1-203ENST00000535916 944 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 LINC02345-202ENST00000558081 1147 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC013652.1-206ENST00000558277 789 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 TEX26-AS1-211ENST00000589840 865 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC073911.1-201ENST00000592296 504 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AP002906.1-201ENST00000603405 233 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC138035.1-203ENST00000604354 1066 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AP001442.1-201ENST00000617755 659 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL035461.2-201ENST00000619201 524 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 REV3L-214ENST00000619481 969 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AC241377.1-201ENST00000619797 406 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RHOXF1P2-201ENST00000635431 502 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 MTCO1P18-201ENST00000455518 1419 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms