Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.16□□□□□ -1.42
SSX3Q99909 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
SSX3Q99909 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SSX3Q99909 LINC01653-201ENST00000456026 1728 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SSX3Q99909 AL133464.1-201ENST00000635130 1705 ntTSL 5 BASIC6.16□□□□□ -1.42
SSX3Q99909 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC6.16□□□□□ -1.42
SSX3Q99909 AC018628.1-201ENST00000624147 3819 ntBASIC6.16□□□□□ -1.42
SSX3Q99909 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.16□□□□□ -1.42
SSX3Q99909 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC6.16□□□□□ -1.42
SSX3Q99909 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SSX3Q99909 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC6.15□□□□□ -1.42
SSX3Q99909 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 AC130464.1-201ENST00000416201 1500 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.15□□□□□ -1.42
SSX3Q99909 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
SSX3Q99909 BX284613.1-201ENST00000452221 1641 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC6.15□□□□□ -1.42
SSX3Q99909 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
SSX3Q99909 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.15□□□□□ -1.42
SSX3Q99909 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 OR9K2-201ENST00000305377 1122 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 RNA5SP448-201ENST00000363151 111 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 SNORD15A-201ENST00000384214 148 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC6.15□□□□□ -1.42
SSX3Q99909 RPSAP72-201ENST00000407020 358 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AC006547.2-201ENST00000412713 526 ntTSL 4 BASIC6.15□□□□□ -1.42
SSX3Q99909 AC017078.1-201ENST00000416146 368 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 NME1P1-201ENST00000420914 382 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AC012560.1-202ENST00000421324 535 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.15□□□□□ -1.42
SSX3Q99909 BTG3P1-201ENST00000435859 716 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 LYPD6B-207ENST00000450639 484 ntAPPRIS ALT2 TSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC6.15□□□□□ -1.42
SSX3Q99909 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC6.15□□□□□ -1.42
SSX3Q99909 GLRXP3-201ENST00000470810 321 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.15□□□□□ -1.42
SSX3Q99909 AC008629.3-201ENST00000505786 586 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 AC139713.1-202ENST00000512366 460 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 DKK2-204ENST00000513208 925 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SSX3Q99909 AC117383.2-201ENST00000514722 322 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 SUMO2P19-201ENST00000518920 295 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 OR7E87P-201ENST00000532397 929 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 AL137802.2-201ENST00000562878 1110 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 AC090286.3-201ENST00000573133 187 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
SSX3Q99909 OR7E94P-202ENST00000601375 790 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 ANKRD20A19P-203ENST00000602724 295 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
SSX3Q99909 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
SSX3Q99909 AP000842.4-201ENST00000638781 748 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 OR9K2-204ENST00000641374 1122 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
SSX3Q99909 OR5AU1-204ENST00000641822 1197 ntBASIC6.15□□□□□ -1.42
SSX3Q99909 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 AC021231.1-201ENST00000559246 1342 ntTSL 5 BASIC6.15□□□□□ -1.43
SSX3Q99909 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.15□□□□□ -1.43
SSX3Q99909 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC6.15□□□□□ -1.43
SSX3Q99909 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
SSX3Q99909 AC096745.2-201ENST00000627783 1914 ntBASIC6.15□□□□□ -1.43
SSX3Q99909 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
SSX3Q99909 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 GABRR3-203ENST00000621172 1521 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
SSX3Q99909 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SSX3Q99909 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.14□□□□□ -1.43
SSX3Q99909 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
SSX3Q99909 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.14□□□□□ -1.43
SSX3Q99909 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC6.14□□□□□ -1.43
SSX3Q99909 MFSD8-227ENST00000641393 4069 ntBASIC6.14□□□□□ -1.43
SSX3Q99909 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC6.14□□□□□ -1.43
SSX3Q99909 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.14□□□□□ -1.43
SSX3Q99909 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
SSX3Q99909 AC005618.1-201ENST00000606901 3148 ntBASIC6.14□□□□□ -1.43
SSX3Q99909 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
SSX3Q99909 MIR555-201ENST00000384987 96 ntBASIC6.14□□□□□ -1.43
SSX3Q99909 RPL7-203ENST00000396466 762 ntTSL 3 BASIC6.14□□□□□ -1.43
SSX3Q99909 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms