Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 OR10AB1P-202ENST00000641219 1686 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
HMGB1P09429 RAN-201ENST00000392367 780 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 LSM5-202ENST00000409292 538 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 AC009413.1-201ENST00000414823 399 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 AC231533.2-201ENST00000419045 978 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 VDAC1P2-201ENST00000423609 850 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 GAPDHP46-201ENST00000424043 994 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 AJ239321.1-201ENST00000424255 564 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 ECHDC1-207ENST00000430841 1009 ntAPPRIS P3 TSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 AC108039.2-201ENST00000440214 359 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 ARMC8P1-201ENST00000443069 1289 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 TCEAL4P1-201ENST00000453620 588 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 RN7SL213P-201ENST00000463482 317 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC8.73□□□□□ -1.01
HMGB1P09429 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 AP002981.1-201ENST00000517692 975 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC8.73□□□□□ -1.01
HMGB1P09429 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC8.73□□□□□ -1.01
HMGB1P09429 AL135934.1-201ENST00000527684 537 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 SAA3P-201ENST00000533267 365 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 AL162171.2-201ENST00000555444 905 ntTSL 3 BASIC8.73□□□□□ -1.01
HMGB1P09429 LINC02180-201ENST00000566439 1010 ntTSL 3 BASIC8.73□□□□□ -1.01
HMGB1P09429 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 RPS28P1-201ENST00000604589 187 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 AC083964.1-201ENST00000607549 630 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 AL121583.1-201ENST00000612444 682 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 MIR6762-201ENST00000613340 86 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC8.73□□□□□ -1.01
HMGB1P09429 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC8.73□□□□□ -1.01
HMGB1P09429 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC8.73□□□□□ -1.01
HMGB1P09429 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
HMGB1P09429 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
HMGB1P09429 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 AL096816.1-201ENST00000623300 2920 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 WASF5P-205ENST00000428639 1455 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 CCDC162P-202ENST00000368966 6751 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
HMGB1P09429 RNA5SP238-201ENST00000365464 120 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 ST3GAL3-213ENST00000372365 673 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 RPL7-203ENST00000396466 762 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 AL593856.1-201ENST00000419949 805 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AL590714.1-201ENST00000420498 379 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 RPL6P2-201ENST00000425480 783 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC009299.1-201ENST00000429684 717 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AL021707.2-201ENST00000431924 786 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 AC026336.1-201ENST00000466577 351 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 RPL23P10-201ENST00000468780 412 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 RPL7AP56-201ENST00000476420 791 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 ATG10-AS1-201ENST00000504846 648 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC008496.1-201ENST00000509131 295 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC8.72□□□□□ -1.01
HMGB1P09429 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 DUX4L52-201ENST00000549363 777 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 DAZAP2-208ENST00000549555 872 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 LINC00556-201ENST00000569603 412 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC124283.2-201ENST00000575085 318 ntTSL 3 BASIC8.72□□□□□ -1.01
HMGB1P09429 USP2-AS1-205ENST00000578923 895 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 AC008736.1-201ENST00000592431 568 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 AC020915.5-201ENST00000596836 964 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC079791.1-201ENST00000605356 973 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 BNIP3P7-201ENST00000605641 516 ntBASIC8.72□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms