Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 AL031963.3-201ENST00000606441 850 ntBASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 AC073912.3-201ENST00000624414 853 ntBASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 AC079834.2-201ENST00000609776 1949 ntBASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CTDP1Q9Y5B0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CTDP1Q9Y5B0 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 AL121603.2-201ENST00000557373 2117 ntBASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 MIR4785-201ENST00000585005 73 ntBASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 AC004264.1-201ENST00000608354 794 ntBASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 Six3os1_6.1-201ENST00000620790 196 ntBASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDP1Q9Y5B0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 KRT16P5-201ENST00000455284 522 ntBASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 AC006128.1-201ENST00000624704 1661 ntBASIC23.09■■□□□ 1.29
CTDP1Q9Y5B0 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 REXO1L12P-201ENST00000622156 912 ntBASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 AC113410.3-201ENST00000623366 203 ntBASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDP1Q9Y5B0 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.28
CTDP1Q9Y5B0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CTDP1Q9Y5B0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CTDP1Q9Y5B0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CTDP1Q9Y5B0 HTR7P1-201ENST00000538670 1336 ntBASIC23.08■■□□□ 1.28
CTDP1Q9Y5B0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTDP1Q9Y5B0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms