Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 KRT16P6-202ENST00000425692 1426 ntBASIC21.47■■□□□ 1.03
SIX2Q9NPC8 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 GUSBP6-202ENST00000438529 1198 ntBASIC21.47■■□□□ 1.03
SIX2Q9NPC8 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SIX2Q9NPC8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 AC083906.2-201ENST00000511578 360 ntBASIC21.46■■□□□ 1.03
SIX2Q9NPC8 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX2Q9NPC8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 MIPEPP3-201ENST00000412105 444 ntBASIC21.45■■□□□ 1.02
SIX2Q9NPC8 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
SIX2Q9NPC8 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.44■■□□□ 1.02
SIX2Q9NPC8 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 AL121832.2-201ENST00000610979 668 ntBASIC21.44■■□□□ 1.02
SIX2Q9NPC8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.44■■□□□ 1.02
SIX2Q9NPC8 AC116562.4-201ENST00000641316 2276 ntBASIC21.44■■□□□ 1.02
SIX2Q9NPC8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX2Q9NPC8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 HLA-G-202ENST00000376815 851 ntBASIC21.43■■□□□ 1.02
SIX2Q9NPC8 HLA-G-203ENST00000376818 1127 ntBASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms