Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.56■□□□□ 0.4
VRK1Q99986 CYP2T3P-201ENST00000601990 817 ntBASIC17.56■□□□□ 0.4
VRK1Q99986 AC083880.1-201ENST00000608266 535 ntBASIC17.56■□□□□ 0.4
VRK1Q99986 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 KRT17P1-201ENST00000399211 1546 ntBASIC17.56■□□□□ 0.4
VRK1Q99986 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.56■□□□□ 0.4
VRK1Q99986 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.56■□□□□ 0.4
VRK1Q99986 AL049796.1-201ENST00000565336 1766 ntBASIC17.56■□□□□ 0.4
VRK1Q99986 AC116050.2-201ENST00000612102 1779 ntBASIC17.56■□□□□ 0.4
VRK1Q99986 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK1Q99986 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.55■□□□□ 0.4
VRK1Q99986 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.55■□□□□ 0.4
VRK1Q99986 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.55■□□□□ 0.4
VRK1Q99986 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 AC100791.3-201ENST00000617619 330 ntBASIC17.55■□□□□ 0.4
VRK1Q99986 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.55■□□□□ 0.4
VRK1Q99986 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
VRK1Q99986 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.55■□□□□ 0.4
VRK1Q99986 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VRK1Q99986 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VRK1Q99986 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
VRK1Q99986 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.55■□□□□ 0.4
VRK1Q99986 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.54■□□□□ 0.4
VRK1Q99986 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.54■□□□□ 0.4
VRK1Q99986 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.54■□□□□ 0.4
VRK1Q99986 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.54■□□□□ 0.4
VRK1Q99986 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VRK1Q99986 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.54■□□□□ 0.4
VRK1Q99986 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.54■□□□□ 0.4
VRK1Q99986 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
VRK1Q99986 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 AL589743.5-201ENST00000616611 1050 ntBASIC17.54■□□□□ 0.4
VRK1Q99986 MYC-209ENST00000641252 345 ntBASIC17.54■□□□□ 0.4
VRK1Q99986 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
VRK1Q99986 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VRK1Q99986 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VRK1Q99986 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VRK1Q99986 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VRK1Q99986 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
VRK1Q99986 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.53■□□□□ 0.4
VRK1Q99986 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.53■□□□□ 0.4
VRK1Q99986 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 POU5F1P3-201ENST00000428824 1078 ntBASIC17.53■□□□□ 0.4
VRK1Q99986 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
VRK1Q99986 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VRK1Q99986 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.53■□□□□ 0.4
VRK1Q99986 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms