Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.49■□□□□ 0.87
TTC28Q96AY4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TTC28Q96AY4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TTC28Q96AY4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.48■□□□□ 0.87
TTC28Q96AY4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 AP000692.2-201ENST00000608391 879 ntBASIC20.48■□□□□ 0.87
TTC28Q96AY4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TTC28Q96AY4 KRT8P8-201ENST00000434750 1448 ntBASIC20.48■□□□□ 0.87
TTC28Q96AY4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TTC28Q96AY4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.48■□□□□ 0.87
TTC28Q96AY4 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TTC28Q96AY4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TTC28Q96AY4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TTC28Q96AY4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TTC28Q96AY4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TTC28Q96AY4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
TTC28Q96AY4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TTC28Q96AY4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 AC068473.5-201ENST00000616428 2072 ntBASIC20.46■□□□□ 0.87
TTC28Q96AY4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 MRPL3P1-201ENST00000400109 1033 ntBASIC20.46■□□□□ 0.87
TTC28Q96AY4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 YBX1P10-201ENST00000444752 975 ntBASIC20.46■□□□□ 0.87
TTC28Q96AY4 AC023632.3-201ENST00000521633 145 ntBASIC20.46■□□□□ 0.87
TTC28Q96AY4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 AC010542.4-201ENST00000563151 1910 ntBASIC20.46■□□□□ 0.87
TTC28Q96AY4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TTC28Q96AY4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.46■□□□□ 0.87
TTC28Q96AY4 LINC01124-201ENST00000409786 2117 ntBASIC20.46■□□□□ 0.87
TTC28Q96AY4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.45■□□□□ 0.86
TTC28Q96AY4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.45■□□□□ 0.86
TTC28Q96AY4 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TTC28Q96AY4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TTC28Q96AY4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.45■□□□□ 0.86
TTC28Q96AY4 TSPY12P-201ENST00000421279 868 ntBASIC20.45■□□□□ 0.86
TTC28Q96AY4 AP002383.4-201ENST00000442518 975 ntBASIC20.45■□□□□ 0.86
TTC28Q96AY4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TTC28Q96AY4 KRT18P58-201ENST00000527480 1120 ntBASIC20.45■□□□□ 0.86
TTC28Q96AY4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.45■□□□□ 0.86
TTC28Q96AY4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TTC28Q96AY4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TTC28Q96AY4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 AC079781.3-201ENST00000449110 356 ntBASIC20.44■□□□□ 0.86
TTC28Q96AY4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TTC28Q96AY4 AC140113.2-201ENST00000604370 208 ntBASIC20.44■□□□□ 0.86
TTC28Q96AY4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TTC28Q96AY4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms