Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 AL136038.3-201ENST00000561909 1096 ntBASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 AC010653.2-201ENST00000623505 997 ntBASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SMC1BQ8NDV3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 AL845331.1-201ENST00000424978 1190 ntBASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 KRT8P45-201ENST00000414328 1447 ntBASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SMC1BQ8NDV3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 AC010542.4-201ENST00000563151 1910 ntBASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMC1BQ8NDV3 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 FAAHP1-202ENST00000446499 1238 ntBASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 AC111152.3-201ENST00000569699 673 ntBASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMC1BQ8NDV3 AC026471.6-201ENST00000622954 1905 ntBASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 SLC25A1P2-201ENST00000430693 912 ntBASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 PRELID1P1-202ENST00000567272 903 ntBASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 C1QL1P1-201ENST00000568105 661 ntBASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMC1BQ8NDV3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 AL022342.1-201ENST00000400363 863 ntBASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 AC140113.3-201ENST00000605663 199 ntBASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms