Protein–RNA interactions for Protein: Q02260

SMD1, Small nuclear ribonucleoprotein Sm D1, yeastyeast

Predicted RBP Predictions only

Length 146 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SMD1Q02260 PRP42YDR235W 1635 nt0.49□□□□□ -2.33
SMD1Q02260 YCR022CYCR022C 345 nt0.48□□□□□ -2.33
SMD1Q02260 YGL188C-AYGL188C-A 141 nt0.48□□□□□ -2.33
SMD1Q02260 YKL100W-AYKL100W-A 90 nt0.48□□□□□ -2.33
SMD1Q02260 ABF2YMR072W 552 nt0.47□□□□□ -2.33
SMD1Q02260 YBR131C-AYBR131C-A 90 nt0.46□□□□□ -2.34
SMD1Q02260 HAL9YOL089C 3093 nt0.46□□□□□ -2.34
SMD1Q02260 PET111YMR257C 2403 nt0.45□□□□□ -2.34
SMD1Q02260 YIL002W-AYIL002W-A 210 nt0.44□□□□□ -2.34
SMD1Q02260 APQ12YIL040W 417 nt0.44□□□□□ -2.34
SMD1Q02260 snR80snR80 171 nt0.43□□□□□ -2.34
SMD1Q02260 YDR366CYDR366C 399 nt0.43□□□□□ -2.34
SMD1Q02260 PAU12YGR294W 363 nt0.43□□□□□ -2.34
SMD1Q02260 YLR041WYLR041W 321 nt0.43□□□□□ -2.34
SMD1Q02260 YOR302WYOR302W 78 nt0.42□□□□□ -2.34
SMD1Q02260 UTP8YGR128C 2142 nt0.41□□□□□ -2.34
SMD1Q02260 YHR131W-AYHR131W-A 246 nt0.41□□□□□ -2.34
SMD1Q02260 BEM3YPL115C 3387 nt0.41□□□□□ -2.34
SMD1Q02260 NNF2YGR089W 2811 nt0.4□□□□□ -2.35
SMD1Q02260 SNU13YEL026W 381 nt0.4□□□□□ -2.35
SMD1Q02260 SBH1YER087C-B 249 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)BtT(AGU)B 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)CtT(AGU)C 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)DtT(AGU)D 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)HtT(AGU)H 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)I1tT(AGU)I1 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)I2tT(AGU)I2 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)JtT(AGU)J 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)N1tT(AGU)N1 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)N2tT(AGU)N2 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)O1tT(AGU)O1 73 nt0.4□□□□□ -2.35
SMD1Q02260 tT(AGU)O2tT(AGU)O2 73 nt0.4□□□□□ -2.35
SMD1Q02260 snR8snR8 190 nt0.39□□□□□ -2.35
SMD1Q02260 TRS65YGR166W 1683 nt0.39□□□□□ -2.35
SMD1Q02260 YDR371C-AYDR371C-A 105 nt0.37□□□□□ -2.35
SMD1Q02260 YSP1YHR155W 3687 nt0.37□□□□□ -2.35
SMD1Q02260 YLL006W-AYLL006W-A 177 nt0.36□□□□□ -2.35
SMD1Q02260 YEL014CYEL014C 306 nt0.35□□□□□ -2.35
SMD1Q02260 RPS26AYGL189C 360 nt0.35□□□□□ -2.35
SMD1Q02260 YLR232WYLR232W 348 nt0.35□□□□□ -2.35
SMD1Q02260 ORC3YLL004W 1851 nt0.35□□□□□ -2.35
SMD1Q02260 TAH1YCR060W 336 nt0.34□□□□□ -2.36
SMD1Q02260 YDR544CYDR544C 429 nt0.33□□□□□ -2.36
SMD1Q02260 YIL142C-AYIL142C-A 333 nt0.33□□□□□ -2.36
SMD1Q02260 YNL097C-BYNL097C-B 123 nt0.33□□□□□ -2.36
SMD1Q02260 NIP1YMR309C 2439 nt0.32□□□□□ -2.36
SMD1Q02260 YJL182CYJL182C 318 nt0.32□□□□□ -2.36
SMD1Q02260 YBR072C-AYBR072C-A 162 nt0.32□□□□□ -2.36
SMD1Q02260 PRP39YML046W 1890 nt0.32□□□□□ -2.36
SMD1Q02260 YBL039C-AYBL039C-A 84 nt0.29□□□□□ -2.36
SMD1Q02260 MLP1YKR095W 5628 nt0.28□□□□□ -2.37
SMD1Q02260 SDH6YDR379C-A 240 nt0.27□□□□□ -2.37
SMD1Q02260 BUL2YML111W 2763 nt0.26□□□□□ -2.37
SMD1Q02260 BIR1YJR089W 2865 nt0.26□□□□□ -2.37
SMD1Q02260 YGL182CYGL182C 324 nt0.26□□□□□ -2.37
SMD1Q02260 YMR160WYMR160W 2451 nt0.26□□□□□ -2.37
SMD1Q02260 CSE1YGL238W 2883 nt0.25□□□□□ -2.37
SMD1Q02260 YMR158W-BYMR158W-B 321 nt0.25□□□□□ -2.37
SMD1Q02260 snR52snR52 92 nt0.25□□□□□ -2.37
SMD1Q02260 YEL073CYEL073C 324 nt0.24□□□□□ -2.37
SMD1Q02260 RCO1YMR075W 2055 nt0.24□□□□□ -2.37
SMD1Q02260 GLG1YKR058W 1851 nt0.23□□□□□ -2.37
SMD1Q02260 COG6YNL041C 2520 nt0.23□□□□□ -2.37
SMD1Q02260 ULP2YIL031W 3105 nt0.22□□□□□ -2.37
SMD1Q02260 YOR381W-AYOR381W-A 168 nt0.21□□□□□ -2.38
SMD1Q02260 YDR406W-AYDR406W-A 246 nt0.19□□□□□ -2.38
SMD1Q02260 snR46snR46 197 nt0.19□□□□□ -2.38
SMD1Q02260 IQG1YPL242C 4488 nt0.19□□□□□ -2.38
SMD1Q02260 YLR342W-AYLR342W-A 174 nt0.18□□□□□ -2.38
SMD1Q02260 YOR314W-AYOR314W-A 111 nt0.18□□□□□ -2.38
SMD1Q02260 YBL100W-BYBL100W-B 5313 nt0.18□□□□□ -2.38
SMD1Q02260 MLP2YIL149C 5040 nt0.17□□□□□ -2.38
SMD1Q02260 YKL145W-AYKL145W-A 93 nt0.17□□□□□ -2.38
SMD1Q02260 YOL013W-AYOL013W-A 192 nt0.16□□□□□ -2.38
SMD1Q02260 YOR186C-AYOR186C-A 210 nt0.16□□□□□ -2.38
SMD1Q02260 HUG1YML058W-A 207 nt0.15□□□□□ -2.39
SMD1Q02260 YDR210WYDR210W 228 nt0.14□□□□□ -2.39
SMD1Q02260 JLP2YMR132C 627 nt0.14□□□□□ -2.39
SMD1Q02260 SPG3YDR504C 384 nt0.13□□□□□ -2.39
SMD1Q02260 YOR170WYOR170W 306 nt0.13□□□□□ -2.39
SMD1Q02260 FMP27YLR454W 7887 nt0.12□□□□□ -2.39
SMD1Q02260 YMR046W-AYMR046W-A 129 nt0.12□□□□□ -2.39
SMD1Q02260 YBR099CYBR099C 384 nt0.12□□□□□ -2.39
SMD1Q02260 tM(CAU)Q2tM(CAU)Q2 78 nt0.11□□□□□ -2.39
SMD1Q02260 YOR329W-AYOR329W-A 210 nt0.1□□□□□ -2.39
SMD1Q02260 ESP1YGR098C 4893 nt0.1□□□□□ -2.39
SMD1Q02260 UTP20YBL004W 7482 nt0.08□□□□□ -2.4
SMD1Q02260 STF2YGR008C 255 nt0.08□□□□□ -2.4
SMD1Q02260 YJL150WYJL150W 303 nt0.08□□□□□ -2.4
SMD1Q02260 EST1YLR233C 2100 nt0.08□□□□□ -2.4
SMD1Q02260 QCR9YGR183C 201 nt0.06□□□□□ -2.4
SMD1Q02260 snR39BsnR39B 96 nt0.06□□□□□ -2.4
SMD1Q02260 YNL054W-BYNL054W-B 5250 nt0.06□□□□□ -2.4
SMD1Q02260 AI1Q0050 2505 nt0.06□□□□□ -2.4
SMD1Q02260 tF(GAA)BtF(GAA)B 73 nt0.05□□□□□ -2.4
SMD1Q02260 tF(GAA)FtF(GAA)F 73 nt0.05□□□□□ -2.4
SMD1Q02260 tF(GAA)GtF(GAA)G 73 nt0.05□□□□□ -2.4
SMD1Q02260 tF(GAA)H1tF(GAA)H1 73 nt0.05□□□□□ -2.4
SMD1Q02260 tF(GAA)H2tF(GAA)H2 73 nt0.05□□□□□ -2.4
SMD1Q02260 tF(GAA)MtF(GAA)M 73 nt0.05□□□□□ -2.4
Retrieved 100 of 7,029 protein–RNA pairs in 14.2 ms