Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 EMBP1-201ENST00000458200 901 ntBASIC12.5□□□□□ -0.41
HSPG2P98160 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC12.5□□□□□ -0.41
HSPG2P98160 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HSPG2P98160 ATP5G2P1-201ENST00000433580 426 ntBASIC12.49□□□□□ -0.41
HSPG2P98160 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC12.49□□□□□ -0.41
HSPG2P98160 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC12.49□□□□□ -0.41
HSPG2P98160 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HSPG2P98160 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HSPG2P98160 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HSPG2P98160 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC12.49□□□□□ -0.41
HSPG2P98160 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC12.49□□□□□ -0.41
HSPG2P98160 AC111152.3-201ENST00000569699 673 ntBASIC12.49□□□□□ -0.41
HSPG2P98160 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC12.49□□□□□ -0.41
HSPG2P98160 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HSPG2P98160 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC12.49□□□□□ -0.41
HSPG2P98160 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HSPG2P98160 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC12.49□□□□□ -0.41
HSPG2P98160 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
HSPG2P98160 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 YBX1P10-201ENST00000444752 975 ntBASIC12.48□□□□□ -0.41
HSPG2P98160 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC12.48□□□□□ -0.41
HSPG2P98160 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
HSPG2P98160 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 SLC25A1P2-201ENST00000430693 912 ntBASIC12.48□□□□□ -0.41
HSPG2P98160 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC12.48□□□□□ -0.41
HSPG2P98160 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 HIST1H2APS4-201ENST00000362070 348 ntBASIC12.48□□□□□ -0.41
HSPG2P98160 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HSPG2P98160 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12.48□□□□□ -0.41
HSPG2P98160 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC12.48□□□□□ -0.41
HSPG2P98160 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
HSPG2P98160 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
HSPG2P98160 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 SPDYE15P-201ENST00000424157 909 ntBASIC12.48□□□□□ -0.41
HSPG2P98160 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
HSPG2P98160 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC12.48□□□□□ -0.41
HSPG2P98160 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HSPG2P98160 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HSPG2P98160 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
HSPG2P98160 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC12.47□□□□□ -0.41
HSPG2P98160 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
HSPG2P98160 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
HSPG2P98160 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC12.47□□□□□ -0.41
HSPG2P98160 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 AP002469.2-201ENST00000531724 424 ntBASIC12.47□□□□□ -0.41
HSPG2P98160 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC12.47□□□□□ -0.41
HSPG2P98160 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC12.47□□□□□ -0.41
HSPG2P98160 BCL10-202ENST00000620248 774 ntTSL 5 BASIC12.47□□□□□ -0.41
HSPG2P98160 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HSPG2P98160 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC12.47□□□□□ -0.41
HSPG2P98160 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
HSPG2P98160 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HSPG2P98160 CNP-204ENST00000472031 1019 ntTSL 2 BASIC12.46□□□□□ -0.41
HSPG2P98160 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HSPG2P98160 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC12.46□□□□□ -0.41
HSPG2P98160 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HSPG2P98160 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms