Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
PRKDCP78527 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.59□□□□□ -0.07
PRKDCP78527 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
PRKDCP78527 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC14.59□□□□□ -0.07
PRKDCP78527 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 SPDYE13P-201ENST00000445314 798 ntBASIC14.59□□□□□ -0.07
PRKDCP78527 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
PRKDCP78527 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
PRKDCP78527 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
PRKDCP78527 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 AL031008.1-201ENST00000619963 541 ntBASIC14.58□□□□□ -0.07
PRKDCP78527 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PRKDCP78527 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PRKDCP78527 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC14.58□□□□□ -0.08
PRKDCP78527 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PRKDCP78527 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PRKDCP78527 MFAP1P1-201ENST00000442257 1255 ntBASIC14.58□□□□□ -0.08
PRKDCP78527 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.58□□□□□ -0.08
PRKDCP78527 HOMER2P1-201ENST00000455653 964 ntBASIC14.58□□□□□ -0.08
PRKDCP78527 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.58□□□□□ -0.08
PRKDCP78527 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PRKDCP78527 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PRKDCP78527 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PRKDCP78527 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC14.58□□□□□ -0.08
PRKDCP78527 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC14.57□□□□□ -0.08
PRKDCP78527 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 AC022898.2-201ENST00000616822 1312 ntBASIC14.57□□□□□ -0.08
PRKDCP78527 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.57□□□□□ -0.08
PRKDCP78527 PNN-205ENST00000556530 601 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC14.57□□□□□ -0.08
PRKDCP78527 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 STX5-203ENST00000394690 1568 ntTSL 5 BASIC14.57□□□□□ -0.08
PRKDCP78527 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 SPDYE15P-201ENST00000424157 909 ntBASIC14.57□□□□□ -0.08
PRKDCP78527 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.57□□□□□ -0.08
PRKDCP78527 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
PRKDCP78527 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC14.57□□□□□ -0.08
PRKDCP78527 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
PRKDCP78527 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC14.57□□□□□ -0.08
PRKDCP78527 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC14.57□□□□□ -0.08
PRKDCP78527 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PRKDCP78527 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 AL136038.3-201ENST00000561909 1096 ntBASIC14.56□□□□□ -0.08
PRKDCP78527 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 SLC25A1P2-201ENST00000430693 912 ntBASIC14.56□□□□□ -0.08
PRKDCP78527 IFNL4P1-201ENST00000607083 540 ntBASIC14.56□□□□□ -0.08
PRKDCP78527 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.56□□□□□ -0.08
PRKDCP78527 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
PRKDCP78527 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC14.56□□□□□ -0.08
PRKDCP78527 RNA5SP419-201ENST00000515908 135 ntBASIC14.56□□□□□ -0.08
PRKDCP78527 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC14.56□□□□□ -0.08
PRKDCP78527 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
PRKDCP78527 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 KRT18P13-201ENST00000400056 1290 ntBASIC14.56□□□□□ -0.08
PRKDCP78527 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PRKDCP78527 AC106795.1-205ENST00000512851 1056 ntBASIC14.56□□□□□ -0.08
PRKDCP78527 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.56□□□□□ -0.08
PRKDCP78527 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC14.55□□□□□ -0.08
PRKDCP78527 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.55□□□□□ -0.08
PRKDCP78527 AC010653.2-201ENST00000623505 997 ntBASIC14.55□□□□□ -0.08
PRKDCP78527 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.55□□□□□ -0.08
PRKDCP78527 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.55□□□□□ -0.08
PRKDCP78527 TSPY12P-201ENST00000421279 868 ntBASIC14.55□□□□□ -0.08
PRKDCP78527 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.55□□□□□ -0.08
PRKDCP78527 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
PRKDCP78527 MIR3652-201ENST00000579335 131 ntBASIC14.55□□□□□ -0.08
PRKDCP78527 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PRKDCP78527 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC14.55□□□□□ -0.08
PRKDCP78527 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms