Protein–RNA interactions for Protein: P38272

SHE3, SWI5-dependent HO expression protein 3, yeastyeast

Known RBP Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHE3P38272 YPR160W-AYPR160W-A 81 nt0.61□□□□□ -2.31
SHE3P38272 snR49snR49 165 nt0.61□□□□□ -2.31
SHE3P38272 UTP10YJL109C 5310 nt0.61□□□□□ -2.31
SHE3P38272 PRP16YKR086W 3216 nt0.6□□□□□ -2.31
SHE3P38272 LTE1YAL024C 4308 nt0.6□□□□□ -2.31
SHE3P38272 ULI1YFR026C 510 nt0.6□□□□□ -2.31
SHE3P38272 YGL123C-AYGL123C-A 231 nt0.6□□□□□ -2.31
SHE3P38272 YIL134C-AYIL134C-A 204 nt0.6□□□□□ -2.31
SHE3P38272 YML099W-AYML099W-A 330 nt0.6□□□□□ -2.31
SHE3P38272 YOR345CYOR345C 351 nt0.6□□□□□ -2.31
SHE3P38272 FYV10YIL097W 1551 nt0.59□□□□□ -2.31
SHE3P38272 tF(GAA)QtF(GAA)Q 75 nt0.59□□□□□ -2.31
SHE3P38272 COX5BYIL111W 456 nt0.59□□□□□ -2.31
SHE3P38272 SEC8YPR055W 3198 nt0.58□□□□□ -2.32
SHE3P38272 snR55snR55 98 nt0.58□□□□□ -2.32
SHE3P38272 YIR030W-AYIR030W-A 384 nt0.58□□□□□ -2.32
SHE3P38272 COX12YLR038C 252 nt0.58□□□□□ -2.32
SHE3P38272 YOR192C-BYOR192C-B 5313 nt0.58□□□□□ -2.32
SHE3P38272 PRP5YBR237W 2550 nt0.58□□□□□ -2.32
SHE3P38272 YCR038W-AYCR038W-A 126 nt0.57□□□□□ -2.32
SHE3P38272 YER053C-AYER053C-A 114 nt0.57□□□□□ -2.32
SHE3P38272 ULP2YIL031W 3105 nt0.57□□□□□ -2.32
SHE3P38272 YCR022CYCR022C 345 nt0.56□□□□□ -2.32
SHE3P38272 BLI1YKL061W 342 nt0.55□□□□□ -2.32
SHE3P38272 YOL155W-AYOL155W-A 135 nt0.55□□□□□ -2.32
SHE3P38272 YBR131C-AYBR131C-A 90 nt0.55□□□□□ -2.32
SHE3P38272 YBR182C-AYBR182C-A 195 nt0.55□□□□□ -2.32
SHE3P38272 snR80snR80 171 nt0.54□□□□□ -2.32
SHE3P38272 OST4YDL232W 111 nt0.54□□□□□ -2.32
SHE3P38272 YJL127W-AYJL127W-A 117 nt0.54□□□□□ -2.32
SHE3P38272 YLR399W-AYLR399W-A 105 nt0.54□□□□□ -2.32
SHE3P38272 ABF2YMR072W 552 nt0.54□□□□□ -2.32
SHE3P38272 YKU70YMR284W 1809 nt0.54□□□□□ -2.32
SHE3P38272 PRP42YDR235W 1635 nt0.53□□□□□ -2.33
SHE3P38272 AI1Q0050 2505 nt0.52□□□□□ -2.33
SHE3P38272 YGL188C-AYGL188C-A 141 nt0.52□□□□□ -2.33
SHE3P38272 TRS65YGR166W 1683 nt0.52□□□□□ -2.33
SHE3P38272 FMP27YLR454W 7887 nt0.51□□□□□ -2.33
SHE3P38272 APQ12YIL040W 417 nt0.51□□□□□ -2.33
SHE3P38272 YOR302WYOR302W 78 nt0.51□□□□□ -2.33
SHE3P38272 YDR366CYDR366C 399 nt0.49□□□□□ -2.33
SHE3P38272 YIL002W-AYIL002W-A 210 nt0.48□□□□□ -2.33
SHE3P38272 PET111YMR257C 2403 nt0.47□□□□□ -2.33
SHE3P38272 YLR041WYLR041W 321 nt0.47□□□□□ -2.33
SHE3P38272 BIR1YJR089W 2865 nt0.46□□□□□ -2.34
SHE3P38272 YKL100W-AYKL100W-A 90 nt0.46□□□□□ -2.34
SHE3P38272 HAL9YOL089C 3093 nt0.46□□□□□ -2.34
SHE3P38272 snR8snR8 190 nt0.45□□□□□ -2.34
SHE3P38272 YEL014CYEL014C 306 nt0.44□□□□□ -2.34
SHE3P38272 SNU13YEL026W 381 nt0.44□□□□□ -2.34
SHE3P38272 SBH1YER087C-B 249 nt0.44□□□□□ -2.34
SHE3P38272 YHR131W-AYHR131W-A 246 nt0.44□□□□□ -2.34
SHE3P38272 NNF2YGR089W 2811 nt0.43□□□□□ -2.34
SHE3P38272 UTP8YGR128C 2142 nt0.43□□□□□ -2.34
SHE3P38272 YNL097C-BYNL097C-B 123 nt0.42□□□□□ -2.34
SHE3P38272 BEM3YPL115C 3387 nt0.42□□□□□ -2.34
SHE3P38272 ORC3YLL004W 1851 nt0.41□□□□□ -2.34
SHE3P38272 YDR371C-AYDR371C-A 105 nt0.41□□□□□ -2.34
SHE3P38272 YDR544CYDR544C 429 nt0.41□□□□□ -2.34
SHE3P38272 IQG1YPL242C 4488 nt0.4□□□□□ -2.35
SHE3P38272 RPS26AYGL189C 360 nt0.39□□□□□ -2.35
SHE3P38272 TAH1YCR060W 336 nt0.38□□□□□ -2.35
SHE3P38272 YJL182CYJL182C 318 nt0.38□□□□□ -2.35
SHE3P38272 YLL006W-AYLL006W-A 177 nt0.38□□□□□ -2.35
SHE3P38272 YSP1YHR155W 3687 nt0.37□□□□□ -2.35
SHE3P38272 YLR232WYLR232W 348 nt0.37□□□□□ -2.35
SHE3P38272 PRP39YML046W 1890 nt0.37□□□□□ -2.35
SHE3P38272 YBR072C-AYBR072C-A 162 nt0.36□□□□□ -2.35
SHE3P38272 NIP1YMR309C 2439 nt0.35□□□□□ -2.35
SHE3P38272 YBL039C-AYBL039C-A 84 nt0.33□□□□□ -2.36
SHE3P38272 SDH6YDR379C-A 240 nt0.31□□□□□ -2.36
SHE3P38272 snR52snR52 92 nt0.31□□□□□ -2.36
SHE3P38272 YGL182CYGL182C 324 nt0.3□□□□□ -2.36
SHE3P38272 BUL2YML111W 2763 nt0.29□□□□□ -2.36
SHE3P38272 THO2YNL139C 4794 nt0.28□□□□□ -2.36
SHE3P38272 YEL073CYEL073C 324 nt0.28□□□□□ -2.36
SHE3P38272 YER078W-AYER078W-A 165 nt0.28□□□□□ -2.36
SHE3P38272 RCO1YMR075W 2055 nt0.28□□□□□ -2.37
SHE3P38272 CSE1YGL238W 2883 nt0.27□□□□□ -2.37
SHE3P38272 YMR158W-BYMR158W-B 321 nt0.27□□□□□ -2.37
SHE3P38272 COG6YNL041C 2520 nt0.26□□□□□ -2.37
SHE3P38272 YOR381W-AYOR381W-A 168 nt0.25□□□□□ -2.37
SHE3P38272 snR46snR46 197 nt0.24□□□□□ -2.37
SHE3P38272 YNL054W-BYNL054W-B 5250 nt0.24□□□□□ -2.37
SHE3P38272 GLG1YKR058W 1851 nt0.23□□□□□ -2.37
SHE3P38272 YDR406W-AYDR406W-A 246 nt0.21□□□□□ -2.38
SHE3P38272 JLP2YMR132C 627 nt0.2□□□□□ -2.38
SHE3P38272 YOR314W-AYOR314W-A 111 nt0.2□□□□□ -2.38
SHE3P38272 MLP1YKR095W 5628 nt0.19□□□□□ -2.38
SHE3P38272 YBL100W-BYBL100W-B 5313 nt0.19□□□□□ -2.38
SHE3P38272 ESP1YGR098C 4893 nt0.19□□□□□ -2.38
SHE3P38272 SPG3YDR504C 384 nt0.18□□□□□ -2.38
SHE3P38272 YDR210WYDR210W 228 nt0.17□□□□□ -2.38
SHE3P38272 YLR342W-AYLR342W-A 174 nt0.17□□□□□ -2.38
SHE3P38272 YOL013W-AYOL013W-A 192 nt0.17□□□□□ -2.38
SHE3P38272 YJL150WYJL150W 303 nt0.15□□□□□ -2.39
SHE3P38272 YOR170WYOR170W 306 nt0.15□□□□□ -2.39
SHE3P38272 YOR329W-AYOR329W-A 210 nt0.15□□□□□ -2.39
SHE3P38272 YOR186C-AYOR186C-A 210 nt0.14□□□□□ -2.39
SHE3P38272 YBR099CYBR099C 384 nt0.13□□□□□ -2.39
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms