Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YOR161W-AYOR161W-A 81 nt0.91□□□□□ -2.26
SHP1P34223 BLI1YKL061W 342 nt0.9□□□□□ -2.27
SHP1P34223 YNL097C-BYNL097C-B 123 nt0.9□□□□□ -2.27
SHP1P34223 SEC8YPR055W 3198 nt0.88□□□□□ -2.27
SHP1P34223 COX5BYIL111W 456 nt0.88□□□□□ -2.27
SHP1P34223 YOL014WYOL014W 375 nt0.88□□□□□ -2.27
SHP1P34223 YPR160W-AYPR160W-A 81 nt0.87□□□□□ -2.27
SHP1P34223 HAL9YOL089C 3093 nt0.86□□□□□ -2.27
SHP1P34223 YCR038W-AYCR038W-A 126 nt0.86□□□□□ -2.27
SHP1P34223 SPG3YDR504C 384 nt0.86□□□□□ -2.27
SHP1P34223 APQ12YIL040W 417 nt0.86□□□□□ -2.27
SHP1P34223 YIL002W-AYIL002W-A 210 nt0.85□□□□□ -2.27
SHP1P34223 YKL100W-AYKL100W-A 90 nt0.85□□□□□ -2.27
SHP1P34223 YLR399W-AYLR399W-A 105 nt0.85□□□□□ -2.27
SHP1P34223 YML002WYML002W 2214 nt0.84□□□□□ -2.27
SHP1P34223 YER053C-AYER053C-A 114 nt0.84□□□□□ -2.27
SHP1P34223 YMR160WYMR160W 2451 nt0.83□□□□□ -2.28
SHP1P34223 YKL145W-AYKL145W-A 93 nt0.83□□□□□ -2.28
SHP1P34223 PRP5YBR237W 2550 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)BtT(AGU)B 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)CtT(AGU)C 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)DtT(AGU)D 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)HtT(AGU)H 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)I1tT(AGU)I1 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)I2tT(AGU)I2 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)JtT(AGU)J 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)N1tT(AGU)N1 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)N2tT(AGU)N2 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)O1tT(AGU)O1 73 nt0.82□□□□□ -2.28
SHP1P34223 tT(AGU)O2tT(AGU)O2 73 nt0.82□□□□□ -2.28
SHP1P34223 JLP2YMR132C 627 nt0.82□□□□□ -2.28
SHP1P34223 CHS6YJL099W 2241 nt0.82□□□□□ -2.28
SHP1P34223 SEC1YDR164C 2175 nt0.81□□□□□ -2.28
SHP1P34223 YLR041WYLR041W 321 nt0.81□□□□□ -2.28
SHP1P34223 FYV10YIL097W 1551 nt0.81□□□□□ -2.28
SHP1P34223 tN(GUU)QtN(GUU)Q 71 nt0.79□□□□□ -2.28
SHP1P34223 YMR046W-AYMR046W-A 129 nt0.79□□□□□ -2.28
SHP1P34223 YEL014CYEL014C 306 nt0.77□□□□□ -2.29
SHP1P34223 tM(CAU)Q1tM(CAU)Q1 76 nt0.77□□□□□ -2.29
SHP1P34223 UBP3YER151C 2739 nt0.77□□□□□ -2.29
SHP1P34223 UTP20YBL004W 7482 nt0.77□□□□□ -2.29
SHP1P34223 OST4YDL232W 111 nt0.76□□□□□ -2.29
SHP1P34223 YDR406W-AYDR406W-A 246 nt0.76□□□□□ -2.29
SHP1P34223 snR46snR46 197 nt0.75□□□□□ -2.29
SHP1P34223 PRP42YDR235W 1635 nt0.75□□□□□ -2.29
SHP1P34223 YJL182CYJL182C 318 nt0.74□□□□□ -2.29
SHP1P34223 YHR131W-AYHR131W-A 246 nt0.73□□□□□ -2.29
SHP1P34223 PRP39YML046W 1890 nt0.73□□□□□ -2.29
SHP1P34223 UTP8YGR128C 2142 nt0.73□□□□□ -2.29
SHP1P34223 TRS65YGR166W 1683 nt0.72□□□□□ -2.29
SHP1P34223 YJL127W-AYJL127W-A 117 nt0.7□□□□□ -2.3
SHP1P34223 SNU13YEL026W 381 nt0.69□□□□□ -2.3
SHP1P34223 snR52snR52 92 nt0.69□□□□□ -2.3
SHP1P34223 LTE1YAL024C 4308 nt0.68□□□□□ -2.3
SHP1P34223 YSP1YHR155W 3687 nt0.67□□□□□ -2.3
SHP1P34223 TAH1YCR060W 336 nt0.66□□□□□ -2.3
SHP1P34223 YLR232WYLR232W 348 nt0.66□□□□□ -2.3
SHP1P34223 YEL073CYEL073C 324 nt0.65□□□□□ -2.31
SHP1P34223 YJL150WYJL150W 303 nt0.64□□□□□ -2.31
SHP1P34223 YLR342W-AYLR342W-A 174 nt0.64□□□□□ -2.31
SHP1P34223 YBL039C-AYBL039C-A 84 nt0.64□□□□□ -2.31
SHP1P34223 YOR192C-BYOR192C-B 5313 nt0.64□□□□□ -2.31
SHP1P34223 BEM3YPL115C 3387 nt0.63□□□□□ -2.31
SHP1P34223 YGL182CYGL182C 324 nt0.63□□□□□ -2.31
SHP1P34223 YMR272W-AYMR272W-A 114 nt0.62□□□□□ -2.31
SHP1P34223 YNL198CYNL198C 303 nt0.62□□□□□ -2.31
SHP1P34223 YPR159C-AYPR159C-A 102 nt0.62□□□□□ -2.31
SHP1P34223 NNF2YGR089W 2811 nt0.62□□□□□ -2.31
SHP1P34223 FMP27YLR454W 7887 nt0.62□□□□□ -2.31
SHP1P34223 PET111YMR257C 2403 nt0.6□□□□□ -2.31
SHP1P34223 ULP2YIL031W 3105 nt0.6□□□□□ -2.31
SHP1P34223 YDR544CYDR544C 429 nt0.59□□□□□ -2.31
SHP1P34223 YOR381W-AYOR381W-A 168 nt0.58□□□□□ -2.32
SHP1P34223 YBR072C-AYBR072C-A 162 nt0.58□□□□□ -2.32
SHP1P34223 UTP10YJL109C 5310 nt0.58□□□□□ -2.32
SHP1P34223 YLL006W-AYLL006W-A 177 nt0.57□□□□□ -2.32
SHP1P34223 YNL054W-BYNL054W-B 5250 nt0.57□□□□□ -2.32
SHP1P34223 YBL053WYBL053W 375 nt0.56□□□□□ -2.32
SHP1P34223 YOR170WYOR170W 306 nt0.55□□□□□ -2.32
SHP1P34223 NIP1YMR309C 2439 nt0.54□□□□□ -2.32
SHP1P34223 BUL2YML111W 2763 nt0.53□□□□□ -2.32
SHP1P34223 YDR371C-AYDR371C-A 105 nt0.53□□□□□ -2.32
SHP1P34223 SBH1YER087C-B 249 nt0.53□□□□□ -2.32
SHP1P34223 RPS26AYGL189C 360 nt0.53□□□□□ -2.32
SHP1P34223 COG6YNL041C 2520 nt0.53□□□□□ -2.33
SHP1P34223 SDH6YDR379C-A 240 nt0.52□□□□□ -2.33
SHP1P34223 YNL337WYNL337W 255 nt0.52□□□□□ -2.33
SHP1P34223 GLG1YKR058W 1851 nt0.51□□□□□ -2.33
SHP1P34223 AI1Q0050 2505 nt0.5□□□□□ -2.33
SHP1P34223 YLR466C-BYLR466C-B 117 nt0.49□□□□□ -2.33
SHP1P34223 YOR225WYOR225W 330 nt0.49□□□□□ -2.33
SHP1P34223 YOR314W-AYOR314W-A 111 nt0.49□□□□□ -2.33
SHP1P34223 ORC3YLL004W 1851 nt0.49□□□□□ -2.33
SHP1P34223 YGR151CYGR151C 336 nt0.47□□□□□ -2.33
SHP1P34223 snR48snR48 113 nt0.47□□□□□ -2.33
SHP1P34223 MLP1YKR095W 5628 nt0.46□□□□□ -2.34
SHP1P34223 YHL015W-AYHL015W-A 84 nt0.45□□□□□ -2.34
SHP1P34223 YNL338WYNL338W 159 nt0.44□□□□□ -2.34
SHP1P34223 YOR329W-AYOR329W-A 210 nt0.44□□□□□ -2.34
SHP1P34223 tL(UAA)QtL(UAA)Q 85 nt0.43□□□□□ -2.34
Retrieved 100 of 7,029 protein–RNA pairs in 15.6 ms