Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LDLRP01130 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
LDLRP01130 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.23■□□□□ 0.67
LDLRP01130 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.23■□□□□ 0.67
LDLRP01130 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.23■□□□□ 0.67
LDLRP01130 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LDLRP01130 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.22■□□□□ 0.67
LDLRP01130 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LDLRP01130 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
LDLRP01130 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDLRP01130 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.21■□□□□ 0.67
LDLRP01130 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.21■□□□□ 0.67
LDLRP01130 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.21■□□□□ 0.67
LDLRP01130 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LDLRP01130 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
LDLRP01130 AC098590.1-201ENST00000468126 897 ntBASIC19.21■□□□□ 0.67
LDLRP01130 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.21■□□□□ 0.67
LDLRP01130 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LDLRP01130 AP001160.3-201ENST00000601484 763 ntBASIC19.21■□□□□ 0.67
LDLRP01130 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.21■□□□□ 0.67
LDLRP01130 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDLRP01130 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LDLRP01130 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.2■□□□□ 0.66
LDLRP01130 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LDLRP01130 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LDLRP01130 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.2■□□□□ 0.66
LDLRP01130 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.2■□□□□ 0.66
LDLRP01130 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.2■□□□□ 0.66
LDLRP01130 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LDLRP01130 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDLRP01130 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
LDLRP01130 AC098818.2-201ENST00000564925 2320 ntBASIC19.19■□□□□ 0.66
LDLRP01130 AC011484.1-201ENST00000377652 1995 ntBASIC19.19■□□□□ 0.66
LDLRP01130 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 DUSP5P2-201ENST00000426873 1033 ntBASIC19.19■□□□□ 0.66
LDLRP01130 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.19■□□□□ 0.66
LDLRP01130 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.19■□□□□ 0.66
LDLRP01130 SLC7A5P1-201ENST00000568957 537 ntBASIC19.19■□□□□ 0.66
LDLRP01130 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
LDLRP01130 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
LDLRP01130 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.19■□□□□ 0.66
LDLRP01130 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDLRP01130 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.18■□□□□ 0.66
LDLRP01130 AC092720.2-201ENST00000602388 1665 ntBASIC19.18■□□□□ 0.66
LDLRP01130 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
LDLRP01130 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms