Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC027271.1-201ENST00000610270 610 ntBASIC7.54□□□□□ -1.2
APOEP02649 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC7.54□□□□□ -1.2
APOEP02649 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.54□□□□□ -1.2
APOEP02649 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
APOEP02649 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC7.54□□□□□ -1.2
APOEP02649 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 AC004014.2-201ENST00000623718 5122 ntBASIC7.53□□□□□ -1.2
APOEP02649 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.53□□□□□ -1.2
APOEP02649 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 AC023886.2-201ENST00000321285 411 ntBASIC7.53□□□□□ -1.2
APOEP02649 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
APOEP02649 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 TMEM213-201ENST00000397602 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 CYP4F34P-201ENST00000425951 481 ntBASIC7.53□□□□□ -1.2
APOEP02649 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.53□□□□□ -1.2
APOEP02649 EAF2-202ENST00000451944 960 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC7.53□□□□□ -1.2
APOEP02649 LNX1-AS2-202ENST00000509974 628 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 AC105999.2-203ENST00000521030 663 ntTSL 3 BASIC7.53□□□□□ -1.2
APOEP02649 OR5M4P-201ENST00000529436 925 ntBASIC7.53□□□□□ -1.2
APOEP02649 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 LYZ-202ENST00000548839 558 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC7.53□□□□□ -1.2
APOEP02649 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC7.53□□□□□ -1.2
APOEP02649 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC7.53□□□□□ -1.2
APOEP02649 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 JAML-213ENST00000640745 951 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 AC087269.2-201ENST00000641764 975 ntBASIC7.53□□□□□ -1.2
APOEP02649 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC7.53□□□□□ -1.2
APOEP02649 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
APOEP02649 AC138915.4-201ENST00000565549 4147 ntBASIC7.53□□□□□ -1.2
APOEP02649 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC7.53□□□□□ -1.2
APOEP02649 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC7.52□□□□□ -1.2
APOEP02649 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
APOEP02649 AC125232.1-201ENST00000452554 1408 ntBASIC7.52□□□□□ -1.2
APOEP02649 AL035563.1-201ENST00000609087 1539 ntBASIC7.52□□□□□ -1.2
APOEP02649 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
APOEP02649 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
APOEP02649 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
APOEP02649 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
APOEP02649 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
APOEP02649 RPL10P16-201ENST00000325000 645 ntBASIC7.52□□□□□ -1.21
APOEP02649 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
APOEP02649 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC7.52□□□□□ -1.21
APOEP02649 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
APOEP02649 HOPX-204ENST00000381260 1141 ntTSL 3 BASIC7.52□□□□□ -1.21
APOEP02649 RNA5SP177-201ENST00000410122 107 ntBASIC7.52□□□□□ -1.21
APOEP02649 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC7.52□□□□□ -1.21
APOEP02649 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC7.52□□□□□ -1.21
APOEP02649 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC7.52□□□□□ -1.21
APOEP02649 AC114755.4-201ENST00000439114 443 ntBASIC7.52□□□□□ -1.21
APOEP02649 AL049651.1-201ENST00000440798 719 ntTSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 FAM177B-204ENST00000445590 1096 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 VN1R6P-201ENST00000458417 907 ntBASIC7.52□□□□□ -1.21
APOEP02649 ST13P6-201ENST00000522430 1102 ntBASIC7.52□□□□□ -1.21
APOEP02649 OR4C1P-201ENST00000530880 937 ntBASIC7.52□□□□□ -1.21
APOEP02649 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC7.52□□□□□ -1.21
APOEP02649 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC7.52□□□□□ -1.21
APOEP02649 HNRNPA1P71-201ENST00000559135 950 ntBASIC7.52□□□□□ -1.21
APOEP02649 OR4N3P-201ENST00000559395 818 ntBASIC7.52□□□□□ -1.21
APOEP02649 NDUFA3P4-201ENST00000560814 250 ntBASIC7.52□□□□□ -1.21
APOEP02649 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC7.52□□□□□ -1.21
APOEP02649 AC068802.1-201ENST00000603420 732 ntBASIC7.52□□□□□ -1.21
APOEP02649 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC7.52□□□□□ -1.21
APOEP02649 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms