Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU2-5P-201ENST00000410533 180 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 RN7SKP39-201ENST00000410773 322 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 VN1R33P-201ENST00000411800 887 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 MORF4L1P5-201ENST00000433352 961 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 Z83313.1-201ENST00000433780 718 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AL606752.1-201ENST00000435442 666 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 GPR141-202ENST00000447769 1270 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 OR7E62P-201ENST00000456741 477 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC127024.1-201ENST00000490847 418 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC138866.1-201ENST00000514522 497 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 IGLVI-42-201ENST00000522485 381 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC103681.2-201ENST00000527450 567 ntTSL 4 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 VDAC2P2-201ENST00000544463 901 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 CHCHD3P2-201ENST00000550751 639 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AL118558.1-201ENST00000557551 566 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC005154.1-216ENST00000582145 1101 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 ZNF208-202ENST00000597040 781 ntTSL 2 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AL137190.1-201ENST00000603288 282 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC239600.2-201ENST00000619615 1165 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 PPP3CB-AS1-214ENST00000620432 654 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 LINC01173-201ENST00000629370 331 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 GTF2IP1-202ENST00000614592 2047 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 SMAD5-AS1-201ENST00000297163 1816 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC092821.3-202ENST00000641304 2767 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 WNK1-220ENST00000574564 1401 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 MTRF1-203ENST00000379480 2185 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 SAMMSON-203ENST00000641005 2168 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 SOCS5P5-201ENST00000402732 1586 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 RBMX2P2-201ENST00000257020 946 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 RNA5SP427-201ENST00000365323 119 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 IGHV4-34-201ENST00000390616 400 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 HNRNPA1P30-201ENST00000424329 751 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AL121578.1-201ENST00000428051 892 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 HBBP1-201ENST00000433329 439 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 LINC01852-201ENST00000434223 967 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AL731892.1-201ENST00000437364 1192 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 LINC01821-202ENST00000438505 882 ntTSL 4 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 RPS29P5-201ENST00000452777 171 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 RN7SL815P-201ENST00000470970 290 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 RN7SL563P-201ENST00000481233 298 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC066616.1-201ENST00000486795 413 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC034206.1-201ENST00000509372 474 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 LNX1-AS2-202ENST00000509974 628 ntTSL 2 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AP000619.1-201ENST00000540293 1000 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC136624.3-201ENST00000571660 567 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AP001120.4-201ENST00000590231 108 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 LIN9-205ENST00000481685 1916 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms