Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 NPL-212ENST00000614468 2376 ntTSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 MS4A2-204ENST00000617306 3512 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC068733.2-201ENST00000605434 1418 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC007998.4-201ENST00000612496 2533 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 PPIAP22-201ENST00000358455 498 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 RNA5SP218-201ENST00000363188 109 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 MIR128-2-201ENST00000384893 84 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 FTH1P26-201ENST00000406512 701 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 LSM5-202ENST00000409292 538 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 MED15P8-201ENST00000411601 545 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 SNRK-AS1-201ENST00000422681 750 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 BMS1P12-201ENST00000428213 706 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 RN7SL233P-201ENST00000469988 277 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 RPL7AP56-201ENST00000476420 791 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 C1orf112-208ENST00000496973 782 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 PFN2-217ENST00000498307 556 ntTSL 4 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC021491.1-201ENST00000502300 349 ntTSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 GCSHP1-201ENST00000512554 484 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC100823.2-201ENST00000518337 699 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 ZNF726-203ENST00000525354 806 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 LINC00958-202ENST00000526388 607 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC009119.1-204ENST00000561599 564 ntTSL 4 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC120498.6-201ENST00000564700 338 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC026464.1-202ENST00000564737 722 ntAPPRIS P5 TSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC105275.2-201ENST00000567907 711 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC099524.1-206ENST00000568131 407 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AF186192.2-204ENST00000581667 524 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC008736.1-201ENST00000592431 568 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 ANKRD20A19P-203ENST00000602724 295 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AL109918.2-201ENST00000605188 279 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 AP000436.1-201ENST00000605239 800 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 CCL14-202ENST00000618404 898 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC005790.1-201ENST00000619774 450 ntBASIC6.35□□□□□ -1.39
NKX3-1Q99801 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
NKX3-1Q99801 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
NKX3-1Q99801 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC015871.3-201ENST00000618835 2261 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC018765.1-201ENST00000623357 3446 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 ENO1P4-201ENST00000416471 1785 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC123912.3-201ENST00000600907 1367 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AKT3-202ENST00000336199 1688 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 HMGB3P1-201ENST00000393368 573 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 CREM-214ENST00000395887 849 ntTSL 5 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 HSPE1-202ENST00000409468 570 ntTSL 2 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 RPL5P28-201ENST00000418634 693 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 AL593856.1-201ENST00000419949 805 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 LINC01715-201ENST00000420776 624 ntTSL 2 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 CLCN3P1-201ENST00000423965 1017 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 DDX11L10-201ENST00000430178 571 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms