Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
AP4E1Q9UPM8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 AC091874.3-201ENST00000512672 1195 ntBASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 AC098934.4-201ENST00000564127 592 ntBASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 AL138781.1-201ENST00000566567 1274 ntBASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
AP4E1Q9UPM8 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 KRT8P20-201ENST00000423953 1409 ntBASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AP4E1Q9UPM8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
AP4E1Q9UPM8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 AL691432.2-201ENST00000607222 2038 ntBASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 AC023632.3-201ENST00000521633 145 ntBASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.77■□□□□ 0.92
AP4E1Q9UPM8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
AP4E1Q9UPM8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.91
AP4E1Q9UPM8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
AP4E1Q9UPM8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.77■□□□□ 0.91
AP4E1Q9UPM8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
AP4E1Q9UPM8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 HLA-G-202ENST00000376815 851 ntBASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 HLA-G-203ENST00000376818 1127 ntBASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 HLA-L-209ENST00000420110 1011 ntBASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.76■□□□□ 0.91
AP4E1Q9UPM8 MYC-209ENST00000641252 345 ntBASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms