Protein–RNA interactions for Protein: P54000

SUB1, RNA polymerase II transcriptional coactivator SUB1, yeastyeast

Known RBP Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SUB1P54000 YLR399W-AYLR399W-A 105 nt0.71□□□□□ -2.3
SUB1P54000 PRP5YBR237W 2550 nt0.7□□□□□ -2.3
SUB1P54000 YDR157WYDR157W 402 nt0.69□□□□□ -2.3
SUB1P54000 YAL067W-AYAL067W-A 228 nt0.69□□□□□ -2.3
SUB1P54000 UTP10YJL109C 5310 nt0.68□□□□□ -2.3
SUB1P54000 SGF11YPL047W 300 nt0.68□□□□□ -2.3
SUB1P54000 YIL134C-AYIL134C-A 204 nt0.67□□□□□ -2.3
SUB1P54000 YJL127W-AYJL127W-A 117 nt0.67□□□□□ -2.3
SUB1P54000 tT(AGU)BtT(AGU)B 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)CtT(AGU)C 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)DtT(AGU)D 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)HtT(AGU)H 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)I1tT(AGU)I1 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)I2tT(AGU)I2 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)JtT(AGU)J 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)N1tT(AGU)N1 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)N2tT(AGU)N2 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)O1tT(AGU)O1 73 nt0.66□□□□□ -2.3
SUB1P54000 tT(AGU)O2tT(AGU)O2 73 nt0.66□□□□□ -2.3
SUB1P54000 ANS1YHR126C 480 nt0.65□□□□□ -2.31
SUB1P54000 COX5BYIL111W 456 nt0.64□□□□□ -2.31
SUB1P54000 OST4YDL232W 111 nt0.63□□□□□ -2.31
SUB1P54000 SSS1YDR086C 243 nt0.63□□□□□ -2.31
SUB1P54000 MLP1YKR095W 5628 nt0.62□□□□□ -2.31
SUB1P54000 YDL185C-AYDL185C-A 228 nt0.61□□□□□ -2.31
SUB1P54000 YMR307C-AYMR307C-A 195 nt0.61□□□□□ -2.31
SUB1P54000 PAM16YJL104W 450 nt0.6□□□□□ -2.31
SUB1P54000 snR190snR190 190 nt0.6□□□□□ -2.31
SUB1P54000 COG8YML071C 1824 nt0.59□□□□□ -2.31
SUB1P54000 YDR048CYDR048C 315 nt0.59□□□□□ -2.31
SUB1P54000 YIL115W-AYIL115W-A 372 nt0.59□□□□□ -2.31
SUB1P54000 PRP42YDR235W 1635 nt0.59□□□□□ -2.32
SUB1P54000 MLP2YIL149C 5040 nt0.59□□□□□ -2.32
SUB1P54000 YIL142C-AYIL142C-A 333 nt0.58□□□□□ -2.32
SUB1P54000 PET111YMR257C 2403 nt0.58□□□□□ -2.32
SUB1P54000 YDR118W-AYDR118W-A 117 nt0.57□□□□□ -2.32
SUB1P54000 PAU12YGR294W 363 nt0.55□□□□□ -2.32
SUB1P54000 RPS27BYHR021C 249 nt0.55□□□□□ -2.32
SUB1P54000 VIK1YPL253C 1944 nt0.55□□□□□ -2.32
SUB1P54000 YJL026C-AYJL026C-A 222 nt0.54□□□□□ -2.32
SUB1P54000 ABF2YMR072W 552 nt0.54□□□□□ -2.32
SUB1P54000 YCR018C-AYCR018C-A 255 nt0.53□□□□□ -2.32
SUB1P54000 INA22YIR024C 651 nt0.53□□□□□ -2.32
SUB1P54000 YPR016W-AYPR016W-A 261 nt0.53□□□□□ -2.32
SUB1P54000 SBH1YER087C-B 249 nt0.52□□□□□ -2.33
SUB1P54000 YDR354C-AYDR354C-A 144 nt0.51□□□□□ -2.33
SUB1P54000 YFL019CYFL019C 354 nt0.5□□□□□ -2.33
SUB1P54000 YOR345CYOR345C 351 nt0.5□□□□□ -2.33
SUB1P54000 CSE2YNR010W 450 nt0.49□□□□□ -2.33
SUB1P54000 HTL1YCR020W-B 237 nt0.48□□□□□ -2.33
SUB1P54000 YCR022CYCR022C 345 nt0.46□□□□□ -2.34
SUB1P54000 ESP1YGR098C 4893 nt0.45□□□□□ -2.34
SUB1P54000 FMP27YLR454W 7887 nt0.45□□□□□ -2.34
SUB1P54000 tN(GUU)QtN(GUU)Q 71 nt0.44□□□□□ -2.34
SUB1P54000 YLR282CYLR282C 342 nt0.44□□□□□ -2.34
SUB1P54000 YPR012WYPR012W 255 nt0.44□□□□□ -2.34
SUB1P54000 YDR102CYDR102C 333 nt0.43□□□□□ -2.34
SUB1P54000 YEL020C-BYEL020C-B 198 nt0.43□□□□□ -2.34
SUB1P54000 YKL136WYKL136W 399 nt0.43□□□□□ -2.34
SUB1P54000 ULI1YFR026C 510 nt0.4□□□□□ -2.35
SUB1P54000 YPR170W-AYPR170W-A 186 nt0.4□□□□□ -2.35
SUB1P54000 YOR192C-BYOR192C-B 5313 nt0.4□□□□□ -2.35
SUB1P54000 YDR183C-AYDR183C-A 258 nt0.39□□□□□ -2.35
SUB1P54000 NNF2YGR089W 2811 nt0.38□□□□□ -2.35
SUB1P54000 YLR041WYLR041W 321 nt0.37□□□□□ -2.35
SUB1P54000 YAF9YNL107W 681 nt0.37□□□□□ -2.35
SUB1P54000 snR60snR60 104 nt0.36□□□□□ -2.35
SUB1P54000 YOR029WYOR029W 336 nt0.36□□□□□ -2.35
SUB1P54000 COY1YKL179C 2040 nt0.36□□□□□ -2.35
SUB1P54000 YDR371C-AYDR371C-A 105 nt0.35□□□□□ -2.35
SUB1P54000 RPS26AYGL189C 360 nt0.35□□□□□ -2.35
SUB1P54000 YIL032CYIL032C 357 nt0.35□□□□□ -2.35
SUB1P54000 YJL197C-AYJL197C-A 282 nt0.35□□□□□ -2.35
SUB1P54000 BUL2YML111W 2763 nt0.33□□□□□ -2.36
SUB1P54000 YFL063WYFL063W 456 nt0.33□□□□□ -2.36
SUB1P54000 YPR092WYPR092W 306 nt0.33□□□□□ -2.36
SUB1P54000 YMR160WYMR160W 2451 nt0.33□□□□□ -2.36
SUB1P54000 NIP1YMR309C 2439 nt0.33□□□□□ -2.36
SUB1P54000 YKL100W-AYKL100W-A 90 nt0.32□□□□□ -2.36
SUB1P54000 YPL038W-AYPL038W-A 192 nt0.32□□□□□ -2.36
SUB1P54000 YOL013W-AYOL013W-A 192 nt0.31□□□□□ -2.36
SUB1P54000 YPR197CYPR197C 564 nt0.31□□□□□ -2.36
SUB1P54000 RCO1YMR075W 2055 nt0.31□□□□□ -2.36
SUB1P54000 YGL123C-AYGL123C-A 231 nt0.3□□□□□ -2.36
SUB1P54000 YNL146WYNL146W 303 nt0.3□□□□□ -2.36
SUB1P54000 BLI1YKL061W 342 nt0.29□□□□□ -2.36
SUB1P54000 YOR161W-AYOR161W-A 81 nt0.29□□□□□ -2.36
SUB1P54000 UTP20YBL004W 7482 nt0.29□□□□□ -2.36
SUB1P54000 ORC3YLL004W 1851 nt0.29□□□□□ -2.36
SUB1P54000 ATP6Q0085 780 nt0.28□□□□□ -2.36
SUB1P54000 YNL028WYNL028W 318 nt0.26□□□□□ -2.37
SUB1P54000 ULP2YIL031W 3105 nt0.26□□□□□ -2.37
SUB1P54000 YNL054W-BYNL054W-B 5250 nt0.26□□□□□ -2.37
SUB1P54000 YGR069WYGR069W 336 nt0.25□□□□□ -2.37
SUB1P54000 YHR131W-AYHR131W-A 246 nt0.25□□□□□ -2.37
SUB1P54000 YLL019W-AYLL019W-A 93 nt0.25□□□□□ -2.37
SUB1P54000 BIR1YJR089W 2865 nt0.25□□□□□ -2.37
SUB1P54000 YGL149WYGL149W 306 nt0.23□□□□□ -2.37
SUB1P54000 YMR193C-AYMR193C-A 387 nt0.23□□□□□ -2.37
SUB1P54000 YBL100W-BYBL100W-B 5313 nt0.23□□□□□ -2.37
Retrieved 100 of 7,029 protein–RNA pairs in 7.2 ms