Protein–RNA interactions for Protein: P47017

LSM1, Sm-like protein LSm1, yeast

Known RBP Predictions only

Length 172 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
LSM1	P47017	YNL319W	YNL319W	441 nt		-0.48	□□□□□ -2.49
LSM1	P47017	TFB5	YDR079C-A	219 nt		-0.49	□□□□□ -2.49
LSM1	P47017	YLL006W-A	YLL006W-A	177 nt		-0.49	□□□□□ -2.49
LSM1	P47017	SGF11	YPL047W	300 nt		-0.49	□□□□□ -2.49
LSM1	P47017	YCR018C-A	YCR018C-A	255 nt		-0.5	□□□□□ -2.49
LSM1	P47017	YBL071C	YBL071C	309 nt		-0.5	□□□□□ -2.49
LSM1	P47017	GRX5	YPL059W	453 nt		-0.5	□□□□□ -2.49
LSM1	P47017	YPL229W	YPL229W	621 nt		-0.5	□□□□□ -2.49
LSM1	P47017	TAR1	YLR154W-C	375 nt		-0.51	□□□□□ -2.49
LSM1	P47017	YFR009W-A	YFR009W-A	258 nt		-0.52	□□□□□ -2.49
LSM1	P47017	YPL225W	YPL225W	441 nt		-0.52	□□□□□ -2.49
LSM1	P47017	HMRA2	YCR096C	360 nt		-0.54	□□□□□ -2.5
LSM1	P47017	YGR164W	YGR164W	336 nt		-0.54	□□□□□ -2.5
LSM1	P47017	YPR002C-A	YPR002C-A	198 nt		-0.54	□□□□□ -2.5
LSM1	P47017	YCR022C	YCR022C	345 nt		-0.55	□□□□□ -2.5
LSM1	P47017	YLR269C	YLR269C	351 nt		-0.55	□□□□□ -2.5
LSM1	P47017	YLR101C	YLR101C	396 nt		-0.56	□□□□□ -2.5
LSM1	P47017	HTB2	YBL002W	396 nt		-0.56	□□□□□ -2.5
LSM1	P47017	ZEO1	YOL109W	342 nt		-0.56	□□□□□ -2.5
LSM1	P47017	ECL1	YGR146C	636 nt		-0.57	□□□□□ -2.5
LSM1	P47017	FYV7	YLR068W	456 nt		-0.57	□□□□□ -2.5
LSM1	P47017	RAD61	YDR014W	1944 nt		-0.58	□□□□□ -2.5
LSM1	P47017	YLR287C	YLR287C	1068 nt		-0.58	□□□□□ -2.5
LSM1	P47017	PRP39	YML046W	1890 nt		-0.58	□□□□□ -2.5
LSM1	P47017	SEC10	YLR166C	2616 nt		-0.59	□□□□□ -2.5
LSM1	P47017	YPR092W	YPR092W	306 nt		-0.59	□□□□□ -2.5
LSM1	P47017	DIE2	YGR227W	1578 nt		-0.59	□□□□□ -2.5
LSM1	P47017	YJL007C	YJL007C	315 nt		-0.6	□□□□□ -2.51
LSM1	P47017	YJL047C-A	YJL047C-A	135 nt		-0.6	□□□□□ -2.51
LSM1	P47017	YML007C-A	YML007C-A	111 nt		-0.6	□□□□□ -2.51
LSM1	P47017	URB1	YKL014C	5295 nt		-0.61	□□□□□ -2.51
LSM1	P47017	YKL083W	YKL083W	615 nt		-0.61	□□□□□ -2.51
LSM1	P47017	YLR334C	YLR334C	381 nt		-0.61	□□□□□ -2.51
LSM1	P47017	CSE1	YGL238W	2883 nt		-0.63	□□□□□ -2.51
LSM1	P47017	YLR282C	YLR282C	342 nt		-0.63	□□□□□ -2.51
LSM1	P47017	YDR426C	YDR426C	378 nt		-0.64	□□□□□ -2.51
LSM1	P47017	RPS25B	YLR333C	327 nt		-0.64	□□□□□ -2.51
LSM1	P47017	GPI15	YNL038W	690 nt		-0.64	□□□□□ -2.51
LSM1	P47017	snR46	snR46	197 nt		-0.64	□□□□□ -2.51
LSM1	P47017	YJL120W	YJL120W	324 nt		-0.65	□□□□□ -2.51
LSM1	P47017	YNL303W	YNL303W	348 nt		-0.66	□□□□□ -2.52
LSM1	P47017	YIR030W-A	YIR030W-A	384 nt		-0.67	□□□□□ -2.52
LSM1	P47017	YPL068C	YPL068C	882 nt		-0.67	□□□□□ -2.52
LSM1	P47017	PCF11	YDR228C	1881 nt		-0.67	□□□□□ -2.52
LSM1	P47017	YGR174W-A	YGR174W-A	87 nt		-0.68	□□□□□ -2.52
LSM1	P47017	YOR192C-C	YOR192C-C	237 nt		-0.68	□□□□□ -2.52
LSM1	P47017	YPL205C	YPL205C	345 nt		-0.68	□□□□□ -2.52
LSM1	P47017	Q0255	Q0255	1419 nt		-0.7	□□□□□ -2.52
LSM1	P47017	YLR285C-A	YLR285C-A	171 nt		-0.7	□□□□□ -2.52
LSM1	P47017	YBR099C	YBR099C	384 nt		-0.71	□□□□□ -2.52
LSM1	P47017	YHR007C-A	YHR007C-A	216 nt		-0.72	□□□□□ -2.52
LSM1	P47017	YHR138C	YHR138C	345 nt		-0.72	□□□□□ -2.52
LSM1	P47017	YAR047C	YAR047C	321 nt		-0.72	□□□□□ -2.52
LSM1	P47017	ISF1	YMR081C	1017 nt		-0.72	□□□□□ -2.52
LSM1	P47017	SNU13	YEL026W	381 nt		-0.74	□□□□□ -2.53
LSM1	P47017	YHR125W	YHR125W	306 nt		-0.74	□□□□□ -2.53
LSM1	P47017	PCC1	YKR095W-A	267 nt		-0.74	□□□□□ -2.53
LSM1	P47017	YLR456W	YLR456W	615 nt		-0.74	□□□□□ -2.53
LSM1	P47017	YDR354C-A	YDR354C-A	144 nt		-0.75	□□□□□ -2.53
LSM1	P47017	YER084W-A	YER084W-A	513 nt		-0.75	□□□□□ -2.53
LSM1	P47017	YMR158W-B	YMR158W-B	321 nt		-0.76	□□□□□ -2.53
LSM1	P47017	YPR170W-A	YPR170W-A	186 nt		-0.76	□□□□□ -2.53
LSM1	P47017	CBS1	YDL069C	690 nt		-0.77	□□□□□ -2.53
LSM1	P47017	BLI1	YKL061W	342 nt		-0.77	□□□□□ -2.53
LSM1	P47017	YLR041W	YLR041W	321 nt		-0.77	□□□□□ -2.53
LSM1	P47017	YOR161W-A	YOR161W-A	81 nt		-0.77	□□□□□ -2.53
LSM1	P47017	YBR072C-A	YBR072C-A	162 nt		-0.77	□□□□□ -2.53
LSM1	P47017	EST1	YLR233C	2100 nt		-0.77	□□□□□ -2.53
LSM1	P47017	YJL026C-A	YJL026C-A	222 nt		-0.78	□□□□□ -2.53
LSM1	P47017	AIM29	YKR074W	468 nt		-0.79	□□□□□ -2.54
LSM1	P47017	YDR366C	YDR366C	399 nt		-0.8	□□□□□ -2.54
LSM1	P47017	EAF6	YJR082C	342 nt		-0.81	□□□□□ -2.54
LSM1	P47017	YGL123C-A	YGL123C-A	231 nt		-0.83	□□□□□ -2.54
LSM1	P47017	YJL113W	YJL113W	4647 nt		-0.84	□□□□□ -2.54
LSM1	P47017	YFL012W	YFL012W	447 nt		-0.85	□□□□□ -2.55
LSM1	P47017	YKL100W-A	YKL100W-A	90 nt		-0.87	□□□□□ -2.55
LSM1	P47017	snR54	snR54	86 nt		-0.87	□□□□□ -2.55
LSM1	P47017	YEL020C-B	YEL020C-B	198 nt		-0.88	□□□□□ -2.55
LSM1	P47017	YAR029W	YAR029W	225 nt		-0.88	□□□□□ -2.55
LSM1	P47017	UTP8	YGR128C	2142 nt		-0.88	□□□□□ -2.55
LSM1	P47017	YHR130C	YHR130C	336 nt		-0.89	□□□□□ -2.55
LSM1	P47017	AGA2	YGL032C	264 nt		-0.9	□□□□□ -2.55
LSM1	P47017	YIL071W-A	YIL071W-A	477 nt		-0.9	□□□□□ -2.55
LSM1	P47017	GLG1	YKR058W	1851 nt		-0.9	□□□□□ -2.55
LSM1	P47017	YDL007C-A	YDL007C-A	258 nt		-0.92	□□□□□ -2.56
LSM1	P47017	YKL123W	YKL123W	381 nt		-0.92	□□□□□ -2.56
LSM1	P47017	YNL067W-B	YNL067W-B	141 nt		-0.92	□□□□□ -2.56
LSM1	P47017	BI2	Q0110	1272 nt		-0.93	□□□□□ -2.56
LSM1	P47017	VPS20	YMR077C	666 nt		-0.93	□□□□□ -2.56
LSM1	P47017	PRM3	YPL192C	402 nt		-0.93	□□□□□ -2.56
LSM1	P47017	YHL009W-B	YHL009W-B	5409 nt		-0.96	□□□□□ -2.56
LSM1	P47017	YFL063W	YFL063W	456 nt		-0.96	□□□□□ -2.56
LSM1	P47017	tT(UGU)G1	tT(UGU)G1	72 nt		-0.97	□□□□□ -2.56
LSM1	P47017	tT(UGU)G2	tT(UGU)G2	72 nt		-0.97	□□□□□ -2.56
LSM1	P47017	tT(UGU)P	tT(UGU)P	72 nt		-0.97	□□□□□ -2.56
LSM1	P47017	RPM2	YML091C	3609 nt		-0.97	□□□□□ -2.57
LSM1	P47017	SDH6	YDR379C-A	240 nt		-0.98	□□□□□ -2.57
LSM1	P47017	tA(UGC)Q	tA(UGC)Q	76 nt		-0.99	□□□□□ -2.57
LSM1	P47017	YER006C-A	YER006C-A	318 nt		-0.99	□□□□□ -2.57
LSM1	P47017	STE18	YJR086W	333 nt		-0.99	□□□□□ -2.57

Retrieved 100 of 7,029 protein–RNA pairs in 52.7 ms