Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 YML007C-AYML007C-A 111 nt0.05□□□□□ -2.4
RTR1P40084 YBL100W-BYBL100W-B 5313 nt0.04□□□□□ -2.4
RTR1P40084 YOR192C-CYOR192C-C 237 nt0.04□□□□□ -2.4
RTR1P40084 HMRA2YCR096C 360 nt0.03□□□□□ -2.4
RTR1P40084 BI2Q0110 1272 nt0.03□□□□□ -2.4
RTR1P40084 YLR171WYLR171W 390 nt0.03□□□□□ -2.4
RTR1P40084 YAR047CYAR047C 321 nt0.03□□□□□ -2.4
RTR1P40084 ORC3YLL004W 1851 nt0.02□□□□□ -2.41
RTR1P40084 YOR053WYOR053W 342 nt0.02□□□□□ -2.41
RTR1P40084 CBS1YDL069C 690 nt0.01□□□□□ -2.41
RTR1P40084 YJL026C-AYJL026C-A 222 nt0.01□□□□□ -2.41
RTR1P40084 YOR345CYOR345C 351 nt0.01□□□□□ -2.41
RTR1P40084 PCF11YDR228C 1881 nt0□□□□□ -2.41
RTR1P40084 ECL1YGR146C 636 nt0□□□□□ -2.41
RTR1P40084 YAR053WYAR053W 297 nt0□□□□□ -2.41
RTR1P40084 YOR011W-AYOR011W-A 207 nt0□□□□□ -2.41
RTR1P40084 YDR371C-AYDR371C-A 105 nt-0.01□□□□□ -2.41
RTR1P40084 RPS26AYGL189C 360 nt-0.03□□□□□ -2.41
RTR1P40084 FYV7YLR068W 456 nt-0.03□□□□□ -2.41
RTR1P40084 YNR025CYNR025C 360 nt-0.03□□□□□ -2.41
RTR1P40084 YOR186C-AYOR186C-A 210 nt-0.04□□□□□ -2.42
RTR1P40084 NNF2YGR089W 2811 nt-0.05□□□□□ -2.42
RTR1P40084 YDR426CYDR426C 378 nt-0.05□□□□□ -2.42
RTR1P40084 YER006C-AYER006C-A 318 nt-0.05□□□□□ -2.42
RTR1P40084 YLR456WYLR456W 615 nt-0.05□□□□□ -2.42
RTR1P40084 YMR307C-AYMR307C-A 195 nt-0.05□□□□□ -2.42
RTR1P40084 MRPL50YNR022C 420 nt-0.05□□□□□ -2.42
RTR1P40084 LEE1YPL054W 906 nt-0.05□□□□□ -2.42
RTR1P40084 snR190snR190 190 nt-0.05□□□□□ -2.42
RTR1P40084 YDL185C-AYDL185C-A 228 nt-0.06□□□□□ -2.42
RTR1P40084 PCC1YKR095W-A 267 nt-0.06□□□□□ -2.42
RTR1P40084 YNL122CYNL122C 348 nt-0.06□□□□□ -2.42
RTR1P40084 SOV1YMR066W 2697 nt-0.07□□□□□ -2.42
RTR1P40084 COY1YKL179C 2040 nt-0.07□□□□□ -2.42
RTR1P40084 YNL146WYNL146W 303 nt-0.07□□□□□ -2.42
RTR1P40084 YPL225WYPL225W 441 nt-0.07□□□□□ -2.42
RTR1P40084 SSS1YDR086C 243 nt-0.08□□□□□ -2.42
RTR1P40084 ULI1YFR026C 510 nt-0.08□□□□□ -2.42
RTR1P40084 tN(GUU)QtN(GUU)Q 71 nt-0.08□□□□□ -2.42
RTR1P40084 YLR232WYLR232W 348 nt-0.08□□□□□ -2.42
RTR1P40084 YNL303WYNL303W 348 nt-0.08□□□□□ -2.42
RTR1P40084 YLR101CYLR101C 396 nt-0.09□□□□□ -2.42
RTR1P40084 TAR1YLR154W-C 375 nt-0.09□□□□□ -2.42
RTR1P40084 YLR334CYLR334C 381 nt-0.09□□□□□ -2.42
RTR1P40084 SGF11YPL047W 300 nt-0.09□□□□□ -2.42
RTR1P40084 TFB5YDR079C-A 219 nt-0.1□□□□□ -2.43
RTR1P40084 YPL068CYPL068C 882 nt-0.1□□□□□ -2.43
RTR1P40084 NIP1YMR309C 2439 nt-0.11□□□□□ -2.43
RTR1P40084 YCR018C-AYCR018C-A 255 nt-0.11□□□□□ -2.43
RTR1P40084 RPL35AYDL191W 363 nt-0.11□□□□□ -2.43
RTR1P40084 RPS25BYLR333C 327 nt-0.14□□□□□ -2.43
RTR1P40084 YJL120WYJL120W 324 nt-0.15□□□□□ -2.43
RTR1P40084 YKU70YMR284W 1809 nt-0.17□□□□□ -2.44
RTR1P40084 YOL013W-BYOL013W-B 291 nt-0.17□□□□□ -2.44
RTR1P40084 snR41snR41 95 nt-0.19□□□□□ -2.44
RTR1P40084 YCR022CYCR022C 345 nt-0.2□□□□□ -2.44
RTR1P40084 YHR007C-AYHR007C-A 216 nt-0.2□□□□□ -2.44
RTR1P40084 YHR131W-AYHR131W-A 246 nt-0.2□□□□□ -2.44
RTR1P40084 YEL073CYEL073C 324 nt-0.21□□□□□ -2.44
RTR1P40084 GLG1YKR058W 1851 nt-0.21□□□□□ -2.44
RTR1P40084 YGR164WYGR164W 336 nt-0.22□□□□□ -2.44
RTR1P40084 VPS20YMR077C 666 nt-0.22□□□□□ -2.44
RTR1P40084 TOM22YNL131W 459 nt-0.22□□□□□ -2.44
RTR1P40084 YDR210WYDR210W 228 nt-0.23□□□□□ -2.45
RTR1P40084 YHR138CYHR138C 345 nt-0.24□□□□□ -2.45
RTR1P40084 YKL136WYKL136W 399 nt-0.24□□□□□ -2.45
RTR1P40084 YLL006W-AYLL006W-A 177 nt-0.24□□□□□ -2.45
RTR1P40084 YPR092WYPR092W 306 nt-0.25□□□□□ -2.45
RTR1P40084 YLR282CYLR282C 342 nt-0.26□□□□□ -2.45
RTR1P40084 YEL050W-AYEL050W-A 192 nt-0.27□□□□□ -2.45
RTR1P40084 snR128snR128 126 nt-0.28□□□□□ -2.45
RTR1P40084 snR8snR8 190 nt-0.29□□□□□ -2.46
RTR1P40084 YDR354C-AYDR354C-A 144 nt-0.3□□□□□ -2.46
RTR1P40084 YLR041WYLR041W 321 nt-0.32□□□□□ -2.46
RTR1P40084 YAR029WYAR029W 225 nt-0.33□□□□□ -2.46
RTR1P40084 SBH2YER019C-A 267 nt-0.34□□□□□ -2.46
RTR1P40084 CSN9YDR179C 489 nt-0.35□□□□□ -2.47
RTR1P40084 YOR161W-AYOR161W-A 81 nt-0.36□□□□□ -2.47
RTR1P40084 snR46snR46 197 nt-0.36□□□□□ -2.47
RTR1P40084 YLR434CYLR434C 384 nt-0.37□□□□□ -2.47
RTR1P40084 YJL007CYJL007C 315 nt-0.38□□□□□ -2.47
RTR1P40084 YDL158CYDL158C 309 nt-0.39□□□□□ -2.47
RTR1P40084 YKL100W-AYKL100W-A 90 nt-0.39□□□□□ -2.47
RTR1P40084 HTB2YBL002W 396 nt-0.4□□□□□ -2.47
RTR1P40084 YEL020C-BYEL020C-B 198 nt-0.41□□□□□ -2.48
RTR1P40084 SNU13YEL026W 381 nt-0.41□□□□□ -2.48
RTR1P40084 ATP19YOL077W-A 207 nt-0.42□□□□□ -2.48
RTR1P40084 PRM3YPL192C 402 nt-0.42□□□□□ -2.48
RTR1P40084 YGL123C-AYGL123C-A 231 nt-0.43□□□□□ -2.48
RTR1P40084 BLI1YKL061W 342 nt-0.43□□□□□ -2.48
RTR1P40084 RAD61YDR014W 1944 nt-0.44□□□□□ -2.48
RTR1P40084 YKL063CYKL063C 504 nt-0.45□□□□□ -2.48
RTR1P40084 YPL205CYPL205C 345 nt-0.45□□□□□ -2.48
RTR1P40084 YBR099CYBR099C 384 nt-0.45□□□□□ -2.48
RTR1P40084 YPL060C-AYPL060C-A 3315 nt-0.45□□□□□ -2.48
RTR1P40084 URB1YKL014C 5295 nt-0.45□□□□□ -2.48
RTR1P40084 YDR366CYDR366C 399 nt-0.46□□□□□ -2.48
RTR1P40084 RPS27BYHR021C 249 nt-0.46□□□□□ -2.48
RTR1P40084 YLR406C-AYLR406C-A 150 nt-0.46□□□□□ -2.48
RTR1P40084 YIL115W-AYIL115W-A 372 nt-0.47□□□□□ -2.48
Retrieved 100 of 7,029 protein–RNA pairs in 57.6 ms