Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
HMGB1P09429 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.65■■□□□ 1.38
HMGB1P09429 GUSBP6-202ENST00000438529 1198 ntBASIC23.65■■□□□ 1.38
HMGB1P09429 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC23.64■■□□□ 1.38
HMGB1P09429 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGB1P09429 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC23.64■■□□□ 1.38
HMGB1P09429 TMEM179-206ENST00000616017 1645 ntBASIC23.64■■□□□ 1.38
HMGB1P09429 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.64■■□□□ 1.37
HMGB1P09429 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.64■■□□□ 1.37
HMGB1P09429 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.64■■□□□ 1.37
HMGB1P09429 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
HMGB1P09429 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.64■■□□□ 1.37
HMGB1P09429 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.64■■□□□ 1.37
HMGB1P09429 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGB1P09429 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGB1P09429 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.63■■□□□ 1.37
HMGB1P09429 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGB1P09429 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGB1P09429 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
HMGB1P09429 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.63■■□□□ 1.37
HMGB1P09429 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
HMGB1P09429 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGB1P09429 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC23.63■■□□□ 1.37
HMGB1P09429 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC23.63■■□□□ 1.37
HMGB1P09429 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.63■■□□□ 1.37
HMGB1P09429 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.63■■□□□ 1.37
HMGB1P09429 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
HMGB1P09429 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
HMGB1P09429 PCDHAC2-203ENST00000615316 3011 ntBASIC23.62■■□□□ 1.37
HMGB1P09429 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
HMGB1P09429 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.62■■□□□ 1.37
HMGB1P09429 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
HMGB1P09429 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGB1P09429 MIR4758-201ENST00000577688 71 ntBASIC23.62■■□□□ 1.37
HMGB1P09429 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
HMGB1P09429 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.62■■□□□ 1.37
HMGB1P09429 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGB1P09429 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGB1P09429 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGB1P09429 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.61■■□□□ 1.37
HMGB1P09429 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
HMGB1P09429 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.61■■□□□ 1.37
HMGB1P09429 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.61■■□□□ 1.37
HMGB1P09429 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.61■■□□□ 1.37
HMGB1P09429 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.61■■□□□ 1.37
HMGB1P09429 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
HMGB1P09429 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGB1P09429 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGB1P09429 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGB1P09429 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 MOK-233ENST00000524214 1539 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGB1P09429 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC23.6■■□□□ 1.37
HMGB1P09429 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGB1P09429 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.6■■□□□ 1.37
HMGB1P09429 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.6■■□□□ 1.37
HMGB1P09429 DUSP5P2-201ENST00000426873 1033 ntBASIC23.6■■□□□ 1.37
HMGB1P09429 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.6■■□□□ 1.37
HMGB1P09429 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.6■■□□□ 1.37
HMGB1P09429 SERP1-205ENST00000487153 657 ntTSL 4 BASIC23.6■■□□□ 1.37
HMGB1P09429 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms