Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PTBP1P-201ENST00000554374 1601 ntBASIC19.38■□□□□ 0.69
CLDN9O95484 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.38■□□□□ 0.69
CLDN9O95484 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.38■□□□□ 0.69
CLDN9O95484 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.38■□□□□ 0.69
CLDN9O95484 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.37■□□□□ 0.69
CLDN9O95484 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.37■□□□□ 0.69
CLDN9O95484 AC010980.2-201ENST00000587099 1412 ntBASIC19.37■□□□□ 0.69
CLDN9O95484 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.37■□□□□ 0.69
CLDN9O95484 AL512625.2-201ENST00000417533 625 ntBASIC19.37■□□□□ 0.69
CLDN9O95484 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.37■□□□□ 0.69
CLDN9O95484 AC005181.1-201ENST00000604782 1256 ntBASIC19.37■□□□□ 0.69
CLDN9O95484 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.37■□□□□ 0.69
CLDN9O95484 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CLDN9O95484 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CLDN9O95484 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CLDN9O95484 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.37■□□□□ 0.69
CLDN9O95484 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.37■□□□□ 0.69
CLDN9O95484 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLDN9O95484 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 TMEM179-206ENST00000616017 1645 ntBASIC19.36■□□□□ 0.69
CLDN9O95484 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.36■□□□□ 0.69
CLDN9O95484 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.36■□□□□ 0.69
CLDN9O95484 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.36■□□□□ 0.69
CLDN9O95484 KRT8P17-201ENST00000453110 1448 ntBASIC19.36■□□□□ 0.69
CLDN9O95484 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.36■□□□□ 0.69
CLDN9O95484 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 MIR935-201ENST00000401179 91 ntBASIC19.36■□□□□ 0.69
CLDN9O95484 AC004911.1-201ENST00000416316 871 ntBASIC19.36■□□□□ 0.69
CLDN9O95484 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
CLDN9O95484 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.36■□□□□ 0.69
CLDN9O95484 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.36■□□□□ 0.69
CLDN9O95484 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
CLDN9O95484 AL589743.5-201ENST00000616611 1050 ntBASIC19.36■□□□□ 0.69
CLDN9O95484 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.36■□□□□ 0.69
CLDN9O95484 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.36■□□□□ 0.69
CLDN9O95484 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.36■□□□□ 0.69
CLDN9O95484 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.36■□□□□ 0.69
CLDN9O95484 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.36■□□□□ 0.69
CLDN9O95484 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLDN9O95484 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.35■□□□□ 0.69
CLDN9O95484 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.35■□□□□ 0.69
CLDN9O95484 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.35■□□□□ 0.69
CLDN9O95484 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
CLDN9O95484 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.35■□□□□ 0.69
CLDN9O95484 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.35■□□□□ 0.69
CLDN9O95484 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.35■□□□□ 0.69
CLDN9O95484 AC080038.1-201ENST00000611274 1154 ntBASIC19.35■□□□□ 0.69
CLDN9O95484 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CLDN9O95484 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CLDN9O95484 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.35■□□□□ 0.69
CLDN9O95484 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLDN9O95484 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.34■□□□□ 0.69
CLDN9O95484 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLDN9O95484 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLDN9O95484 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.34■□□□□ 0.69
CLDN9O95484 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
CLDN9O95484 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.34■□□□□ 0.69
CLDN9O95484 AC092437.1-201ENST00000624794 1048 ntBASIC19.34■□□□□ 0.69
CLDN9O95484 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.34■□□□□ 0.69
CLDN9O95484 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.34■□□□□ 0.69
CLDN9O95484 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLDN9O95484 KRT8P20-201ENST00000423953 1409 ntBASIC19.34■□□□□ 0.69
CLDN9O95484 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.34■□□□□ 0.69
CLDN9O95484 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
CLDN9O95484 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLDN9O95484 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms