Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PYM1-204ENST00000454792 884 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 GAPDHP38-201ENST00000503632 1002 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 AP001782.1-202ENST00000527774 445 ntTSL 3 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 LINC02330-201ENST00000557784 555 ntTSL 4 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 MIR4262-201ENST00000578394 54 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 RN7SL376P-201ENST00000578594 264 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 RN7SL237P-201ENST00000580912 287 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 RPL23AP90-201ENST00000603820 236 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 STK32A-209ENST00000626951 798 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC233280.20-201ENST00000637412 416 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC116631.1-202ENST00000640984 683 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC119674.1-217ENST00000641942 1086 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 IKZF3-207ENST00000377944 1669 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 IKZF3-208ENST00000377945 1696 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 TRIM64EP-201ENST00000531233 1307 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 AC006116.1-201ENST00000587908 2171 ntBASIC6.41□□□□□ -1.38
NKX3-1Q99801 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 CREM-218ENST00000460270 1416 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX3-1Q99801 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX3-1Q99801 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 C2orf80-201ENST00000341287 1238 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC008171.1-201ENST00000395058 200 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 CRIP1P3-201ENST00000416794 220 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AL445193.2-201ENST00000419596 620 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AL031584.2-201ENST00000420585 767 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 RPSAP59-201ENST00000421048 890 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AL355994.1-201ENST00000424379 260 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 RPL35P8-201ENST00000433284 337 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AL031963.2-201ENST00000433761 398 ntTSL 2 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 OR3B1P-201ENST00000437536 893 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AP000534.1-201ENST00000444162 1294 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NKX3-1Q99801 CT45A11P-201ENST00000448043 1134 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 RPL10P6-201ENST00000457497 318 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 OR13C1P-201ENST00000457612 963 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC117395.2-201ENST00000463122 1128 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 LINC02010-201ENST00000470860 516 ntTSL 4 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 BX890604.1-206ENST00000471090 922 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC015820.1-201ENST00000473882 321 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 RN7SL332P-201ENST00000482163 254 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC137549.1-201ENST00000514243 533 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 TPT1-AS1-214ENST00000521507 665 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 SAA3P-201ENST00000533267 365 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC104938.1-203ENST00000561834 546 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 EIF4EBP2P2-201ENST00000563883 333 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC244090.2-201ENST00000567614 792 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 AC010618.2-201ENST00000596192 460 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 MIR6745-201ENST00000612694 127 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 IGKV1OR1-1-201ENST00000613775 347 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 MIR6829-201ENST00000620375 67 ntBASIC6.4□□□□□ -1.38
NKX3-1Q99801 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 CCDC196-207ENST00000636229 1107 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
NKX3-1Q99801 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
NKX3-1Q99801 AC133552.3-201ENST00000572236 1869 ntBASIC6.4□□□□□ -1.39
NKX3-1Q99801 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.39
NKX3-1Q99801 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
NKX3-1Q99801 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
NKX3-1Q99801 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NKX3-1Q99801 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
NKX3-1Q99801 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.4□□□□□ -1.39
NKX3-1Q99801 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC110597.1-201ENST00000562669 3176 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL031123.3-201ENST00000623345 1837 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX3-1Q99801 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX3-1Q99801 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC093909.4-201ENST00000514297 1991 ntTSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 OR4D6-201ENST00000300127 1054 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 RNA5SP301-201ENST00000362537 121 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 IGKV3D-11-201ENST00000390277 444 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 RNA5SP297-201ENST00000391029 113 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms