Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX2Q99626 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.22■□□□□ 0.99
CDX2Q99626 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.22■□□□□ 0.99
CDX2Q99626 KRT17P6-201ENST00000453795 1220 ntBASIC21.22■□□□□ 0.99
CDX2Q99626 VENTXP5-201ENST00000523979 775 ntBASIC21.22■□□□□ 0.99
CDX2Q99626 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.22■□□□□ 0.99
CDX2Q99626 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX2Q99626 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX2Q99626 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CDX2Q99626 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.22■□□□□ 0.99
CDX2Q99626 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CDX2Q99626 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CDX2Q99626 KRT8P45-201ENST00000414328 1447 ntBASIC21.21■□□□□ 0.99
CDX2Q99626 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.21■□□□□ 0.99
CDX2Q99626 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 AC004870.1-201ENST00000315132 882 ntBASIC21.21■□□□□ 0.99
CDX2Q99626 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CDX2Q99626 ATP5G2P1-201ENST00000433580 426 ntBASIC21.21■□□□□ 0.99
CDX2Q99626 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.21■□□□□ 0.99
CDX2Q99626 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.21■□□□□ 0.99
CDX2Q99626 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.21■□□□□ 0.99
CDX2Q99626 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
CDX2Q99626 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.21■□□□□ 0.99
CDX2Q99626 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.21■□□□□ 0.99
CDX2Q99626 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX2Q99626 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.2■□□□□ 0.99
CDX2Q99626 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX2Q99626 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CDX2Q99626 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.2■□□□□ 0.98
CDX2Q99626 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CDX2Q99626 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.2■□□□□ 0.98
CDX2Q99626 CCR12P-201ENST00000446203 998 ntBASIC21.2■□□□□ 0.98
CDX2Q99626 AL136038.3-201ENST00000561909 1096 ntBASIC21.2■□□□□ 0.98
CDX2Q99626 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX2Q99626 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX2Q99626 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.2■□□□□ 0.98
CDX2Q99626 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.2■□□□□ 0.98
CDX2Q99626 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX2Q99626 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CDX2Q99626 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.19■□□□□ 0.98
CDX2Q99626 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.19■□□□□ 0.98
CDX2Q99626 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.19■□□□□ 0.98
CDX2Q99626 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.19■□□□□ 0.98
CDX2Q99626 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.19■□□□□ 0.98
CDX2Q99626 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
CDX2Q99626 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDX2Q99626 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.18■□□□□ 0.98
CDX2Q99626 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX2Q99626 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.18■□□□□ 0.98
CDX2Q99626 AL022342.1-201ENST00000400363 863 ntBASIC21.18■□□□□ 0.98
CDX2Q99626 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.18■□□□□ 0.98
CDX2Q99626 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDX2Q99626 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.18■□□□□ 0.98
CDX2Q99626 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX2Q99626 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
CDX2Q99626 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
CDX2Q99626 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 AC007663.1-201ENST00000438948 1240 ntBASIC21.17■□□□□ 0.98
CDX2Q99626 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.17■□□□□ 0.98
CDX2Q99626 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.17■□□□□ 0.98
CDX2Q99626 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.17■□□□□ 0.98
CDX2Q99626 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.17■□□□□ 0.98
CDX2Q99626 PRSS44-201ENST00000515154 1146 ntBASIC21.17■□□□□ 0.98
CDX2Q99626 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.17■□□□□ 0.98
CDX2Q99626 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.17■□□□□ 0.98
CDX2Q99626 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.17■□□□□ 0.98
CDX2Q99626 AC140113.3-201ENST00000605663 199 ntBASIC21.17■□□□□ 0.98
CDX2Q99626 AC010653.2-201ENST00000623505 997 ntBASIC21.17■□□□□ 0.98
CDX2Q99626 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
CDX2Q99626 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.17■□□□□ 0.98
CDX2Q99626 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.17■□□□□ 0.98
CDX2Q99626 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDX2Q99626 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms