Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 AC083880.1-201ENST00000608266 535 ntBASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 AC105020.6-201ENST00000621523 1217 ntBASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTCHD3Q3KNS1 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 DUSP5P2-201ENST00000426873 1033 ntBASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 TMEM191A-211ENST00000637163 1067 ntBASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD3Q3KNS1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 RNF165-205ENST00000588679 2904 ntBASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 LSM12P1-201ENST00000411836 588 ntBASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AC097658.1-201ENST00000475555 843 ntBASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AC091874.3-201ENST00000512672 1195 ntBASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD3Q3KNS1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 MYC-209ENST00000641252 345 ntBASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 KRT17P1-201ENST00000399211 1546 ntBASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms