Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
PKNOX1P55347 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.64■□□□□ 0.73
PKNOX1P55347 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PKNOX1P55347 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.64■□□□□ 0.73
PKNOX1P55347 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.64■□□□□ 0.73
PKNOX1P55347 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PKNOX1P55347 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.64■□□□□ 0.73
PKNOX1P55347 DPP3P2-201ENST00000416030 1696 ntBASIC19.64■□□□□ 0.73
PKNOX1P55347 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PKNOX1P55347 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
PKNOX1P55347 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.63■□□□□ 0.73
PKNOX1P55347 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
PKNOX1P55347 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PKNOX1P55347 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.63■□□□□ 0.73
PKNOX1P55347 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.63■□□□□ 0.73
PKNOX1P55347 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.63■□□□□ 0.73
PKNOX1P55347 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.63■□□□□ 0.73
PKNOX1P55347 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.63■□□□□ 0.73
PKNOX1P55347 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PKNOX1P55347 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.63■□□□□ 0.73
PKNOX1P55347 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PKNOX1P55347 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
PKNOX1P55347 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.63■□□□□ 0.73
PKNOX1P55347 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PKNOX1P55347 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
PKNOX1P55347 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.62■□□□□ 0.73
PKNOX1P55347 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.62■□□□□ 0.73
PKNOX1P55347 AL158211.5-201ENST00000623583 2518 ntBASIC19.62■□□□□ 0.73
PKNOX1P55347 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PKNOX1P55347 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.62■□□□□ 0.73
PKNOX1P55347 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.61■□□□□ 0.73
PKNOX1P55347 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
PKNOX1P55347 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.61■□□□□ 0.73
PKNOX1P55347 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.61■□□□□ 0.73
PKNOX1P55347 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.61■□□□□ 0.73
PKNOX1P55347 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.61■□□□□ 0.73
PKNOX1P55347 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
PKNOX1P55347 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
PKNOX1P55347 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PKNOX1P55347 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.61■□□□□ 0.73
PKNOX1P55347 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PKNOX1P55347 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.6■□□□□ 0.73
PKNOX1P55347 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 AC125437.2-201ENST00000625180 2167 ntBASIC19.6■□□□□ 0.73
PKNOX1P55347 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
PKNOX1P55347 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.6■□□□□ 0.73
PKNOX1P55347 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.6■□□□□ 0.73
PKNOX1P55347 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
PKNOX1P55347 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PKNOX1P55347 TERF1P5-201ENST00000477545 1207 ntBASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms