Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 KRT18P13-201ENST00000400056 1290 ntBASIC20.91■□□□□ 0.94
VCANP13611 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.91■□□□□ 0.94
VCANP13611 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.91■□□□□ 0.94
VCANP13611 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.91■□□□□ 0.94
VCANP13611 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.91■□□□□ 0.94
VCANP13611 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
VCANP13611 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.91■□□□□ 0.94
VCANP13611 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.91■□□□□ 0.94
VCANP13611 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.9■□□□□ 0.94
VCANP13611 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.9■□□□□ 0.94
VCANP13611 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.9■□□□□ 0.94
VCANP13611 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.9■□□□□ 0.94
VCANP13611 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.9■□□□□ 0.94
VCANP13611 VENTXP5-201ENST00000523979 775 ntBASIC20.9■□□□□ 0.94
VCANP13611 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.9■□□□□ 0.94
VCANP13611 AL031985.4-201ENST00000642138 673 ntBASIC20.9■□□□□ 0.94
VCANP13611 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.9■□□□□ 0.94
VCANP13611 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCANP13611 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCANP13611 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCANP13611 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.89■□□□□ 0.94
VCANP13611 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
VCANP13611 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
VCANP13611 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCANP13611 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.89■□□□□ 0.93
VCANP13611 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCANP13611 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.89■□□□□ 0.93
VCANP13611 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
VCANP13611 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCANP13611 AC092068.2-201ENST00000590491 1708 ntBASIC20.89■□□□□ 0.93
VCANP13611 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.89■□□□□ 0.93
VCANP13611 ATP5G2P1-201ENST00000433580 426 ntBASIC20.89■□□□□ 0.93
VCANP13611 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VCANP13611 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCANP13611 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VCANP13611 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VCANP13611 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.88■□□□□ 0.93
VCANP13611 AP002982.1-201ENST00000492365 877 ntBASIC20.88■□□□□ 0.93
VCANP13611 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.88■□□□□ 0.93
VCANP13611 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.88■□□□□ 0.93
VCANP13611 AL121829.2-201ENST00000620908 328 ntBASIC20.88■□□□□ 0.93
VCANP13611 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
VCANP13611 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
VCANP13611 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 B3GAT3P1-201ENST00000471720 806 ntBASIC20.88■□□□□ 0.93
VCANP13611 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.88■□□□□ 0.93
VCANP13611 AC083849.1-201ENST00000615227 514 ntBASIC20.88■□□□□ 0.93
VCANP13611 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VCANP13611 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCANP13611 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCANP13611 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.87■□□□□ 0.93
VCANP13611 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCANP13611 KSR1P1-201ENST00000446298 240 ntBASIC20.87■□□□□ 0.93
VCANP13611 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VCANP13611 EMBP1-201ENST00000458200 901 ntBASIC20.87■□□□□ 0.93
VCANP13611 AC106795.1-205ENST00000512851 1056 ntBASIC20.87■□□□□ 0.93
VCANP13611 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
VCANP13611 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCANP13611 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VCANP13611 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.87■□□□□ 0.93
VCANP13611 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCANP13611 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.87■□□□□ 0.93
VCANP13611 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VCANP13611 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCANP13611 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.87■□□□□ 0.93
VCANP13611 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
VCANP13611 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.87■□□□□ 0.93
VCANP13611 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCANP13611 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.87■□□□□ 0.93
VCANP13611 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.86■□□□□ 0.93
VCANP13611 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms