Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C4orf51-201ENST00000438731 932 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 AC091808.1-201ENST00000438867 786 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 AC005588.1-201ENST00000439168 162 ntBASIC8.29□□□□□ -1.08
MSX1P28360 PTGES3P1-201ENST00000439531 483 ntBASIC8.29□□□□□ -1.08
MSX1P28360 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 BX470209.2-201ENST00000442086 928 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 AC104763.1-201ENST00000475274 360 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC126182.1-201ENST00000478134 357 ntBASIC8.29□□□□□ -1.08
MSX1P28360 ACTG1P20-201ENST00000486001 468 ntBASIC8.29□□□□□ -1.08
MSX1P28360 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 AC022296.1-201ENST00000512176 682 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 NDUFA5P2-201ENST00000519723 344 ntBASIC8.29□□□□□ -1.08
MSX1P28360 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 AP003108.2-208ENST00000543044 883 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 RPS3AP4-201ENST00000555161 764 ntBASIC8.29□□□□□ -1.08
MSX1P28360 LINC00520-204ENST00000556417 778 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 AC087465.1-201ENST00000560574 245 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC091304.4-201ENST00000565703 620 ntBASIC8.29□□□□□ -1.08
MSX1P28360 SHBG-209ENST00000572182 479 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 DLGAP1-AS3-201ENST00000577649 1258 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 RN7SL804P-201ENST00000582466 298 ntBASIC8.29□□□□□ -1.08
MSX1P28360 PDLIM1P2-201ENST00000582923 607 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC015688.2-201ENST00000584523 262 ntBASIC8.29□□□□□ -1.08
MSX1P28360 AC005758.1-201ENST00000586408 625 ntBASIC8.29□□□□□ -1.08
MSX1P28360 EIF4A2P1-201ENST00000587313 1063 ntBASIC8.29□□□□□ -1.08
MSX1P28360 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 AC123912.1-201ENST00000594564 447 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 IGKV1OR2-9-201ENST00000603957 287 ntBASIC8.29□□□□□ -1.08
MSX1P28360 IGKV1OR2-11-201ENST00000604120 287 ntBASIC8.29□□□□□ -1.08
MSX1P28360 ASNSD1-207ENST00000607535 579 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 Metazoa_SRP.74-201ENST00000614973 284 ntBASIC8.29□□□□□ -1.08
MSX1P28360 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 YARS-210ENST00000616261 1167 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 C22orf24-203ENST00000623735 1247 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 ABBA01040607.1-201ENST00000640749 321 ntBASIC8.29□□□□□ -1.08
MSX1P28360 KNG1-203ENST00000447445 1391 ntTSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 SBNO1-203ENST00000602398 4313 ntAPPRIS ALT1 TSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 C1GALT1C1-202ENST00000371313 1492 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 AC018647.1-202ENST00000449644 1651 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 GALK2-203ENST00000544523 1950 ntTSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 CEP63-201ENST00000332047 2056 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 UBLCP1-201ENST00000296786 2392 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 STYK1-201ENST00000075503 2995 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 EXOC7-220ENST00000607838 3353 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 TXNRD1-204ENST00000429002 3855 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 ATP9B-202ENST00000426216 4361 ntTSL 5 BASIC8.29□□□□□ -1.08
MSX1P28360 FLJ36000-201ENST00000612344 3801 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 LINC01344-203ENST00000608183 2631 ntTSL 2 BASIC8.29□□□□□ -1.08
MSX1P28360 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 MAP7D3-203ENST00000370661 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSX1P28360 SERPINB6-205ENST00000380539 1338 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
MSX1P28360 NAP1L3-202ENST00000475430 2555 ntAPPRIS ALT2 TSL 2 BASIC8.28□□□□□ -1.08
MSX1P28360 KDM4C-202ENST00000381309 4655 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 CEP128-209ENST00000555265 4662 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
MSX1P28360 LARP1B-210ENST00000512292 3105 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 PLS3-AS1-202ENST00000607680 1763 ntTSL 2 BASIC8.28□□□□□ -1.08
MSX1P28360 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 FIGNL1-214ENST00000617389 3259 ntAPPRIS P1 TSL 4 BASIC8.28□□□□□ -1.08
MSX1P28360 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC8.28□□□□□ -1.08
MSX1P28360 LRRC37A15P-201ENST00000514785 1355 ntBASIC8.28□□□□□ -1.08
MSX1P28360 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 CPNE4-210ENST00000512332 2230 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 OR2AT4-201ENST00000305159 1042 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
MSX1P28360 C12orf54-201ENST00000314014 887 ntAPPRIS P1 TSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
MSX1P28360 TTTY8B-201ENST00000328819 531 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 TTTY8-201ENST00000329684 531 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 Y_RNA.41-201ENST00000362646 102 ntBASIC8.28□□□□□ -1.08
MSX1P28360 KRBOX1-201ENST00000383748 674 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 NPM1P11-201ENST00000417106 855 ntBASIC8.28□□□□□ -1.08
MSX1P28360 RPL7AP72-201ENST00000417266 768 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC008173.1-201ENST00000418901 264 ntBASIC8.28□□□□□ -1.08
MSX1P28360 LINC01687-202ENST00000419467 465 ntTSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 MTCO3P1-205ENST00000422088 832 ntBASIC8.28□□□□□ -1.08
MSX1P28360 ARAFP1-201ENST00000422172 605 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AP001062.2-201ENST00000426029 127 ntTSL 3 BASIC8.28□□□□□ -1.08
MSX1P28360 CARM1P1-201ENST00000426329 1185 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC8.28□□□□□ -1.08
MSX1P28360 RPL26P34-201ENST00000431005 451 ntBASIC8.28□□□□□ -1.08
MSX1P28360 MTCO1P45-201ENST00000431457 267 ntBASIC8.28□□□□□ -1.08
MSX1P28360 MTND1P32-201ENST00000433043 938 ntBASIC8.28□□□□□ -1.08
MSX1P28360 NDUFS5P5-201ENST00000437256 321 ntBASIC8.28□□□□□ -1.08
MSX1P28360 COX7BP2-201ENST00000437976 242 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC010967.3-201ENST00000438648 213 ntBASIC8.28□□□□□ -1.08
MSX1P28360 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSX1P28360 IFITM4P-207ENST00000441380 420 ntBASIC8.28□□□□□ -1.08
MSX1P28360 MTCO1P48-201ENST00000448024 1096 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC8.28□□□□□ -1.08
MSX1P28360 RPSAP64-201ENST00000451820 336 ntBASIC8.28□□□□□ -1.08
MSX1P28360 AC017002.3-201ENST00000455309 757 ntTSL 2 BASIC8.28□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms