Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS28Q9UK41 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS28Q9UK41 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.67■□□□□ 0.9
VPS28Q9UK41 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 AP003097.1-201ENST00000530657 1135 ntBASIC20.67■□□□□ 0.9
VPS28Q9UK41 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS28Q9UK41 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS28Q9UK41 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS28Q9UK41 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS28Q9UK41 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 AC026366.1-201ENST00000488803 879 ntBASIC20.65■□□□□ 0.9
VPS28Q9UK41 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 SOX15-203ENST00000570788 1093 ntBASIC20.65■□□□□ 0.9
VPS28Q9UK41 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VPS28Q9UK41 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS28Q9UK41 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS28Q9UK41 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.64■□□□□ 0.9
VPS28Q9UK41 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
VPS28Q9UK41 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
VPS28Q9UK41 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS28Q9UK41 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.64■□□□□ 0.89
VPS28Q9UK41 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS28Q9UK41 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VPS28Q9UK41 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms