Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 AC083880.1-201ENST00000608266 535 ntBASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.7■□□□□ 0.58
CTHRC1Q96CG8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTHRC1Q96CG8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 AL355802.2-201ENST00000402069 882 ntBASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTHRC1Q96CG8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 TCF3P1-201ENST00000423021 1937 ntBASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 HLA-G-202ENST00000376815 851 ntBASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 HLA-G-203ENST00000376818 1127 ntBASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 HLA-B-256ENST00000639848 1089 ntBASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CTHRC1Q96CG8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CTHRC1Q96CG8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms