Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 RNF126P1-201ENST00000567452 1320 ntBASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN3Q8NCR9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN3Q8NCR9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 AL391005.1-201ENST00000623953 2435 ntBASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.05■□□□□ 0.16
CLRN3Q8NCR9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 RPS2P7-201ENST00000447334 885 ntBASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 RAP2CP1-202ENST00000605179 643 ntBASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 AC011551.1-201ENST00000614101 683 ntBASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 AC046158.3-201ENST00000624947 2558 ntBASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN3Q8NCR9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms