Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
DEPDC4Q8N2C3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
DEPDC4Q8N2C3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
DEPDC4Q8N2C3 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 KRT19P1-201ENST00000405746 1186 ntBASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 AC016769.1-201ENST00000409132 1010 ntBASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
DEPDC4Q8N2C3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DEPDC4Q8N2C3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 AC026471.1-201ENST00000564629 3026 ntBASIC18.62■□□□□ 0.57
DEPDC4Q8N2C3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 AC005224.4-201ENST00000583262 1652 ntBASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 AC137761.2-201ENST00000561729 223 ntBASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 AC145350.3-201ENST00000569033 163 ntBASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 IKBKGP1-201ENST00000612193 1073 ntBASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.61■□□□□ 0.57
DEPDC4Q8N2C3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 AP004607.4-201ENST00000530158 1459 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms