Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.33■□□□□ 0.85
CHRNA4P43681 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CHRNA4P43681 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA4P43681 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA4P43681 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA4P43681 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA4P43681 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.33■□□□□ 0.84
CHRNA4P43681 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA4P43681 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA4P43681 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA4P43681 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA4P43681 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA4P43681 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA4P43681 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA4P43681 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.32■□□□□ 0.84
CHRNA4P43681 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA4P43681 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CHRNA4P43681 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.32■□□□□ 0.84
CHRNA4P43681 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA4P43681 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA4P43681 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA4P43681 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.32■□□□□ 0.84
CHRNA4P43681 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA4P43681 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA4P43681 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CHRNA4P43681 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CHRNA4P43681 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA4P43681 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA4P43681 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.31■□□□□ 0.84
CHRNA4P43681 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA4P43681 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CHRNA4P43681 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA4P43681 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.31■□□□□ 0.84
CHRNA4P43681 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CHRNA4P43681 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CHRNA4P43681 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.3■□□□□ 0.84
CHRNA4P43681 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.3■□□□□ 0.84
CHRNA4P43681 C2orf69P4-201ENST00000565394 541 ntBASIC20.3■□□□□ 0.84
CHRNA4P43681 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.3■□□□□ 0.84
CHRNA4P43681 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.3■□□□□ 0.84
CHRNA4P43681 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.3■□□□□ 0.84
CHRNA4P43681 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.3■□□□□ 0.84
CHRNA4P43681 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CHRNA4P43681 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CHRNA4P43681 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA4P43681 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA4P43681 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA4P43681 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHRNA4P43681 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA4P43681 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.29■□□□□ 0.84
CHRNA4P43681 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CHRNA4P43681 AC098934.4-201ENST00000564127 592 ntBASIC20.29■□□□□ 0.84
CHRNA4P43681 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA4P43681 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA4P43681 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CHRNA4P43681 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA4P43681 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CHRNA4P43681 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA4P43681 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA4P43681 SLC29A4P1-201ENST00000398760 971 ntBASIC20.28■□□□□ 0.84
CHRNA4P43681 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.28■□□□□ 0.84
CHRNA4P43681 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.28■□□□□ 0.84
CHRNA4P43681 AL138781.1-201ENST00000566567 1274 ntBASIC20.28■□□□□ 0.84
CHRNA4P43681 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA4P43681 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 AFG3L1P-217ENST00000557444 2447 ntBASIC20.28■□□□□ 0.84
CHRNA4P43681 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CHRNA4P43681 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA4P43681 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms