Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.96■□□□□ 0.95
PTPN9P43378 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
PTPN9P43378 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
PTPN9P43378 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PTPN9P43378 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.96■□□□□ 0.95
PTPN9P43378 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
PTPN9P43378 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
PTPN9P43378 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.95■□□□□ 0.94
PTPN9P43378 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.95■□□□□ 0.94
PTPN9P43378 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.95■□□□□ 0.94
PTPN9P43378 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.95■□□□□ 0.94
PTPN9P43378 MYC-209ENST00000641252 345 ntBASIC20.95■□□□□ 0.94
PTPN9P43378 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
PTPN9P43378 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN9P43378 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PTPN9P43378 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.94■□□□□ 0.94
PTPN9P43378 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.94■□□□□ 0.94
PTPN9P43378 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PTPN9P43378 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PTPN9P43378 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.94■□□□□ 0.94
PTPN9P43378 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
PTPN9P43378 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PTPN9P43378 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PTPN9P43378 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.94■□□□□ 0.94
PTPN9P43378 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 KRT8P20-201ENST00000423953 1409 ntBASIC20.94■□□□□ 0.94
PTPN9P43378 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN9P43378 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.94■□□□□ 0.94
PTPN9P43378 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 AL391422.3-201ENST00000603791 2761 ntBASIC20.93■□□□□ 0.94
PTPN9P43378 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.93■□□□□ 0.94
PTPN9P43378 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.93■□□□□ 0.94
PTPN9P43378 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.93■□□□□ 0.94
PTPN9P43378 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.93■□□□□ 0.94
PTPN9P43378 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.93■□□□□ 0.94
PTPN9P43378 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.93■□□□□ 0.94
PTPN9P43378 AC098934.4-201ENST00000564127 592 ntBASIC20.93■□□□□ 0.94
PTPN9P43378 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
PTPN9P43378 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PTPN9P43378 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN9P43378 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.93■□□□□ 0.94
PTPN9P43378 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 TCF3P1-201ENST00000423021 1937 ntBASIC20.92■□□□□ 0.94
PTPN9P43378 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PTPN9P43378 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.92■□□□□ 0.94
PTPN9P43378 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 HLA-L-209ENST00000420110 1011 ntBASIC20.92■□□□□ 0.94
PTPN9P43378 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
PTPN9P43378 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PTPN9P43378 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.92■□□□□ 0.94
PTPN9P43378 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.92■□□□□ 0.94
PTPN9P43378 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PTPN9P43378 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN9P43378 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.92■□□□□ 0.94
PTPN9P43378 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
PTPN9P43378 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 ID1-201ENST00000376105 1233 ntBASIC20.91■□□□□ 0.94
PTPN9P43378 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 HLA-G-202ENST00000376815 851 ntBASIC20.91■□□□□ 0.94
PTPN9P43378 HLA-G-203ENST00000376818 1127 ntBASIC20.91■□□□□ 0.94
PTPN9P43378 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.91■□□□□ 0.94
PTPN9P43378 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN9P43378 AC069152.1-201ENST00000438030 544 ntBASIC20.91■□□□□ 0.94
PTPN9P43378 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.91■□□□□ 0.94
PTPN9P43378 AC097658.1-201ENST00000475555 843 ntBASIC20.91■□□□□ 0.94
PTPN9P43378 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms