Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGA1P17096 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGA1P17096 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
HMGA1P17096 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.98■□□□□ 0.95
HMGA1P17096 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGA1P17096 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGA1P17096 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGA1P17096 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGA1P17096 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGA1P17096 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 KRT8P20-201ENST00000423953 1409 ntBASIC20.97■□□□□ 0.95
HMGA1P17096 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGA1P17096 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGA1P17096 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 HLA-G-202ENST00000376815 851 ntBASIC20.97■□□□□ 0.95
HMGA1P17096 HLA-G-203ENST00000376818 1127 ntBASIC20.97■□□□□ 0.95
HMGA1P17096 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGA1P17096 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
HMGA1P17096 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.97■□□□□ 0.95
HMGA1P17096 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HMGA1P17096 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGA1P17096 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
HMGA1P17096 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HMGA1P17096 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGA1P17096 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGA1P17096 RARRES2P10-201ENST00000564312 460 ntBASIC20.96■□□□□ 0.95
HMGA1P17096 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGA1P17096 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGA1P17096 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGA1P17096 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HMGA1P17096 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGA1P17096 KRT8P17-201ENST00000453110 1448 ntBASIC20.95■□□□□ 0.95
HMGA1P17096 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGA1P17096 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGA1P17096 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGA1P17096 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.95■□□□□ 0.94
HMGA1P17096 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGA1P17096 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HMGA1P17096 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.95■□□□□ 0.94
HMGA1P17096 AL049637.2-201ENST00000641778 930 ntBASIC20.95■□□□□ 0.94
HMGA1P17096 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGA1P17096 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGA1P17096 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGA1P17096 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGA1P17096 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGA1P17096 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HMGA1P17096 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGA1P17096 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.94■□□□□ 0.94
HMGA1P17096 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.94■□□□□ 0.94
HMGA1P17096 AL121906.2-201ENST00000621597 723 ntBASIC20.94■□□□□ 0.94
HMGA1P17096 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HMGA1P17096 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.94■□□□□ 0.94
HMGA1P17096 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGA1P17096 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.93■□□□□ 0.94
HMGA1P17096 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms