Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 AL121603.2-201ENST00000557373 2117 ntBASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 AL023875.1-201ENST00000640777 796 ntBASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.21■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC133681.1-201ENST00000465482 601 ntBASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AL031963.3-201ENST00000606441 850 ntBASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC124016.1-201ENST00000609552 612 ntBASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 KRT8P20-201ENST00000423953 1409 ntBASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 KRASP1-201ENST00000407852 552 ntBASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AC110285.5-201ENST00000611501 352 ntBASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AL121829.2-201ENST00000620908 328 ntBASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 AL121906.2-201ENST00000621597 723 ntBASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
C1QTNF3-AMACRE9PGA6 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms