Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.3■□□□□ 0.84
HDDC3Q8N4P3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 MTDHP1-201ENST00000605323 784 ntBASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDDC3Q8N4P3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 RPS2P55-201ENST00000397318 883 ntBASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 AC107956.1-201ENST00000494359 873 ntBASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 AC233702.5-201ENST00000584107 538 ntBASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 AL023875.1-201ENST00000640777 796 ntBASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 CLDN5-201ENST00000403084 2357 ntBASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDDC3Q8N4P3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDDC3Q8N4P3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HDDC3Q8N4P3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HDDC3Q8N4P3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HDDC3Q8N4P3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 AF106564.1-201ENST00000607058 2553 ntBASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 TSPY7P-201ENST00000431358 1114 ntBASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms