Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.54■■□□□ 1.2
TPM4P67936 AC012414.1-201ENST00000556676 535 ntBASIC22.54■■□□□ 1.2
TPM4P67936 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC22.54■■□□□ 1.2
TPM4P67936 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM4P67936 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.54■■□□□ 1.2
TPM4P67936 KRT87P-202ENST00000534226 1464 ntBASIC22.54■■□□□ 1.2
TPM4P67936 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM4P67936 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.53■■□□□ 1.2
TPM4P67936 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
TPM4P67936 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TPM4P67936 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
TPM4P67936 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM4P67936 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 AC079140.4-201ENST00000507448 529 ntBASIC22.53■■□□□ 1.2
TPM4P67936 AC090340.1-201ENST00000620778 4980 ntBASIC22.53■■□□□ 1.2
TPM4P67936 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.53■■□□□ 1.2
TPM4P67936 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TPM4P67936 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TPM4P67936 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.52■■□□□ 1.2
TPM4P67936 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
TPM4P67936 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.52■■□□□ 1.2
TPM4P67936 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM4P67936 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM4P67936 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.52■■□□□ 1.2
TPM4P67936 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.52■■□□□ 1.2
TPM4P67936 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TPM4P67936 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.52■■□□□ 1.2
TPM4P67936 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.52■■□□□ 1.2
TPM4P67936 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.52■■□□□ 1.2
TPM4P67936 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.52■■□□□ 1.2
TPM4P67936 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TPM4P67936 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM4P67936 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
TPM4P67936 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
TPM4P67936 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
TPM4P67936 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
TPM4P67936 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.51■■□□□ 1.19
TPM4P67936 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.51■■□□□ 1.19
TPM4P67936 TMEM179-206ENST00000616017 1645 ntBASIC22.51■■□□□ 1.19
TPM4P67936 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.51■■□□□ 1.19
TPM4P67936 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
TPM4P67936 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.51■■□□□ 1.19
TPM4P67936 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.51■■□□□ 1.19
TPM4P67936 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
TPM4P67936 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TPM4P67936 AL020996.1-203ENST00000536896 2307 ntBASIC22.51■■□□□ 1.19
TPM4P67936 AL158211.5-201ENST00000623583 2518 ntBASIC22.51■■□□□ 1.19
TPM4P67936 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
TPM4P67936 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM4P67936 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
TPM4P67936 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM4P67936 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM4P67936 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.5■■□□□ 1.19
TPM4P67936 PBX2P1-201ENST00000493219 1291 ntBASIC22.5■■□□□ 1.19
TPM4P67936 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.5■■□□□ 1.19
TPM4P67936 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TPM4P67936 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
TPM4P67936 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.5■■□□□ 1.19
TPM4P67936 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.5■■□□□ 1.19
TPM4P67936 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM4P67936 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TPM4P67936 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.5■■□□□ 1.19
TPM4P67936 RASA4CP-201ENST00000424092 1398 ntBASIC22.5■■□□□ 1.19
TPM4P67936 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 AC125437.2-201ENST00000625180 2167 ntBASIC22.49■■□□□ 1.19
TPM4P67936 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.49■■□□□ 1.19
TPM4P67936 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
TPM4P67936 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
TPM4P67936 AP001330.3-201ENST00000520123 633 ntBASIC22.49■■□□□ 1.19
TPM4P67936 AC138907.5-202ENST00000569484 235 ntBASIC22.49■■□□□ 1.19
TPM4P67936 TPRG1LP1-201ENST00000598702 760 ntBASIC22.49■■□□□ 1.19
TPM4P67936 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
TPM4P67936 AL354811.1-201ENST00000610286 706 ntBASIC22.49■■□□□ 1.19
TPM4P67936 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
TPM4P67936 MCC-208ENST00000514701 2855 ntTSL 2 BASIC22.49■■□□□ 1.19
TPM4P67936 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.49■■□□□ 1.19
TPM4P67936 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms