Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCPP55072 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VCPP55072 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.57■■□□□ 1.04
VCPP55072 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VCPP55072 LSM12P1-201ENST00000411836 588 ntBASIC21.57■■□□□ 1.04
VCPP55072 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.57■■□□□ 1.04
VCPP55072 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
VCPP55072 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCPP55072 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
VCPP55072 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
VCPP55072 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
VCPP55072 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCPP55072 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VCPP55072 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.57■■□□□ 1.04
VCPP55072 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.56■■□□□ 1.04
VCPP55072 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.56■■□□□ 1.04
VCPP55072 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
VCPP55072 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 RCN1P1-201ENST00000400413 996 ntBASIC21.56■■□□□ 1.04
VCPP55072 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.56■■□□□ 1.04
VCPP55072 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
VCPP55072 RN7SL471P-201ENST00000580476 299 ntBASIC21.56■■□□□ 1.04
VCPP55072 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
VCPP55072 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
VCPP55072 AC133561.5-201ENST00000635547 218 ntBASIC21.56■■□□□ 1.04
VCPP55072 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.56■■□□□ 1.04
VCPP55072 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.56■■□□□ 1.04
VCPP55072 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
VCPP55072 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCPP55072 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.56■■□□□ 1.04
VCPP55072 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.55■■□□□ 1.04
VCPP55072 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VCPP55072 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.55■■□□□ 1.04
VCPP55072 AC233263.1-201ENST00000578059 224 ntBASIC21.55■■□□□ 1.04
VCPP55072 AC060766.5-201ENST00000590539 871 ntBASIC21.55■■□□□ 1.04
VCPP55072 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
VCPP55072 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VCPP55072 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
VCPP55072 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.55■■□□□ 1.04
VCPP55072 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.54■■□□□ 1.04
VCPP55072 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
VCPP55072 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.54■■□□□ 1.04
VCPP55072 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.54■■□□□ 1.04
VCPP55072 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.54■■□□□ 1.04
VCPP55072 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.54■■□□□ 1.04
VCPP55072 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
VCPP55072 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.54■■□□□ 1.04
VCPP55072 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
VCPP55072 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VCPP55072 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
VCPP55072 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.53■■□□□ 1.04
VCPP55072 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.53■■□□□ 1.04
VCPP55072 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.53■■□□□ 1.04
VCPP55072 AL591742.1-201ENST00000604433 565 ntBASIC21.53■■□□□ 1.04
VCPP55072 AC243732.1-201ENST00000612648 864 ntBASIC21.53■■□□□ 1.04
VCPP55072 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
VCPP55072 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
VCPP55072 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCPP55072 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
VCPP55072 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VCPP55072 AC121338.2-201ENST00000622535 1744 ntBASIC21.52■■□□□ 1.04
VCPP55072 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.52■■□□□ 1.04
VCPP55072 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 TSPY7P-201ENST00000431358 1114 ntBASIC21.52■■□□□ 1.04
VCPP55072 AC245052.3-201ENST00000450182 901 ntBASIC21.52■■□□□ 1.04
VCPP55072 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 AL162412.1-201ENST00000567129 965 ntBASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms