Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL5A1P20908 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.52■□□□□ 0.71
COL5A1P20908 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A1P20908 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL5A1P20908 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.51■□□□□ 0.71
COL5A1P20908 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A1P20908 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A1P20908 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A1P20908 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A1P20908 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL5A1P20908 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A1P20908 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A1P20908 AC124283.5-201ENST00000624661 1809 ntBASIC19.51■□□□□ 0.71
COL5A1P20908 LINC00565-201ENST00000562710 2331 ntBASIC19.51■□□□□ 0.71
COL5A1P20908 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A1P20908 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL5A1P20908 FAM197Y1-201ENST00000421178 764 ntBASIC19.51■□□□□ 0.71
COL5A1P20908 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A1P20908 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A1P20908 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.51■□□□□ 0.71
COL5A1P20908 AL031963.3-201ENST00000606441 850 ntBASIC19.51■□□□□ 0.71
COL5A1P20908 AC073195.1-201ENST00000607241 877 ntBASIC19.51■□□□□ 0.71
COL5A1P20908 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.51■□□□□ 0.71
COL5A1P20908 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A1P20908 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.5■□□□□ 0.71
COL5A1P20908 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.5■□□□□ 0.71
COL5A1P20908 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
COL5A1P20908 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A1P20908 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A1P20908 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.5■□□□□ 0.71
COL5A1P20908 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.5■□□□□ 0.71
COL5A1P20908 Z98882.1-201ENST00000622160 2253 ntBASIC19.5■□□□□ 0.71
COL5A1P20908 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A1P20908 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A1P20908 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A1P20908 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A1P20908 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.49■□□□□ 0.71
COL5A1P20908 AC079598.2-202ENST00000546624 1451 ntBASIC19.49■□□□□ 0.71
COL5A1P20908 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A1P20908 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
COL5A1P20908 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL5A1P20908 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.49■□□□□ 0.71
COL5A1P20908 AL049597.2-201ENST00000565575 961 ntBASIC19.49■□□□□ 0.71
COL5A1P20908 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.49■□□□□ 0.71
COL5A1P20908 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A1P20908 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A1P20908 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A1P20908 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.49■□□□□ 0.71
COL5A1P20908 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.49■□□□□ 0.71
COL5A1P20908 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.49■□□□□ 0.71
COL5A1P20908 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL5A1P20908 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL5A1P20908 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A1P20908 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A1P20908 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.48■□□□□ 0.71
COL5A1P20908 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
COL5A1P20908 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
COL5A1P20908 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
COL5A1P20908 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 NIFKP9-201ENST00000419265 221 ntBASIC19.48■□□□□ 0.71
COL5A1P20908 AC116562.2-201ENST00000507042 360 ntBASIC19.48■□□□□ 0.71
COL5A1P20908 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.48■□□□□ 0.71
COL5A1P20908 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 FBXW4P1-201ENST00000426721 2239 ntBASIC19.48■□□□□ 0.71
COL5A1P20908 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A1P20908 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A1P20908 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.47■□□□□ 0.71
COL5A1P20908 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A1P20908 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A1P20908 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.47■□□□□ 0.71
COL5A1P20908 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.47■□□□□ 0.71
COL5A1P20908 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.47■□□□□ 0.71
COL5A1P20908 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A1P20908 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.47■□□□□ 0.71
COL5A1P20908 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A1P20908 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL5A1P20908 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.47■□□□□ 0.71
COL5A1P20908 KRT8P36-201ENST00000489121 1440 ntBASIC19.47■□□□□ 0.71
COL5A1P20908 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL5A1P20908 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A1P20908 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.47■□□□□ 0.71
COL5A1P20908 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.46■□□□□ 0.71
COL5A1P20908 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A1P20908 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A1P20908 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.46■□□□□ 0.71
COL5A1P20908 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.46■□□□□ 0.71
COL5A1P20908 AC004264.1-201ENST00000608354 794 ntBASIC19.46■□□□□ 0.71
COL5A1P20908 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms