Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CPSF4O95639 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.16■□□□□ 0.66
CPSF4O95639 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.16■□□□□ 0.66
CPSF4O95639 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.16■□□□□ 0.66
CPSF4O95639 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4O95639 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CPSF4O95639 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.16■□□□□ 0.66
CPSF4O95639 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.16■□□□□ 0.66
CPSF4O95639 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.15■□□□□ 0.66
CPSF4O95639 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.15■□□□□ 0.66
CPSF4O95639 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.15■□□□□ 0.66
CPSF4O95639 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.15■□□□□ 0.66
CPSF4O95639 FAM21FP-204ENST00000608637 956 ntBASIC19.15■□□□□ 0.66
CPSF4O95639 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.15■□□□□ 0.66
CPSF4O95639 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.15■□□□□ 0.66
CPSF4O95639 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.15■□□□□ 0.66
CPSF4O95639 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4O95639 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.14■□□□□ 0.66
CPSF4O95639 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.14■□□□□ 0.66
CPSF4O95639 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.14■□□□□ 0.66
CPSF4O95639 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.14■□□□□ 0.66
CPSF4O95639 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CPSF4O95639 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.66
CPSF4O95639 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
CPSF4O95639 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4O95639 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4O95639 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.14■□□□□ 0.65
CPSF4O95639 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.14■□□□□ 0.65
CPSF4O95639 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.14■□□□□ 0.65
CPSF4O95639 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CPSF4O95639 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.14■□□□□ 0.65
CPSF4O95639 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4O95639 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.14■□□□□ 0.65
CPSF4O95639 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4O95639 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CPSF4O95639 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4O95639 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4O95639 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4O95639 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4O95639 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.13■□□□□ 0.65
CPSF4O95639 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.13■□□□□ 0.65
CPSF4O95639 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CPSF4O95639 MYCNOS-205ENST00000641950 531 ntBASIC19.13■□□□□ 0.65
CPSF4O95639 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.13■□□□□ 0.65
CPSF4O95639 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CPSF4O95639 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4O95639 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.13■□□□□ 0.65
CPSF4O95639 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4O95639 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.13■□□□□ 0.65
CPSF4O95639 AC007952.6-201ENST00000573168 2673 ntBASIC19.13■□□□□ 0.65
CPSF4O95639 AC003957.1-201ENST00000625108 2673 ntBASIC19.13■□□□□ 0.65
CPSF4O95639 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
CPSF4O95639 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CPSF4O95639 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms