Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.78■□□□□ 0.76
SDC3O75056 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.78■□□□□ 0.76
SDC3O75056 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.78■□□□□ 0.76
SDC3O75056 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 EP400NL-214ENST00000641289 2402 ntBASIC19.77■□□□□ 0.76
SDC3O75056 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.77■□□□□ 0.76
SDC3O75056 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SDC3O75056 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SDC3O75056 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.77■□□□□ 0.76
SDC3O75056 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.77■□□□□ 0.76
SDC3O75056 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.77■□□□□ 0.76
SDC3O75056 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SDC3O75056 AP001412.1-201ENST00000608405 714 ntBASIC19.77■□□□□ 0.76
SDC3O75056 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC3O75056 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.77■□□□□ 0.76
SDC3O75056 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.77■□□□□ 0.76
SDC3O75056 AC027702.1-201ENST00000563810 1770 ntBASIC19.77■□□□□ 0.76
SDC3O75056 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SDC3O75056 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SDC3O75056 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.76■□□□□ 0.75
SDC3O75056 AL135905.2-201ENST00000584934 1404 ntBASIC19.76■□□□□ 0.75
SDC3O75056 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 AL024507.2-201ENST00000606070 2574 ntBASIC19.76■□□□□ 0.75
SDC3O75056 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.76■□□□□ 0.75
SDC3O75056 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.76■□□□□ 0.75
SDC3O75056 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SDC3O75056 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SDC3O75056 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SDC3O75056 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.76■□□□□ 0.75
SDC3O75056 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC3O75056 AL117328.2-201ENST00000624617 1940 ntBASIC19.76■□□□□ 0.75
SDC3O75056 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SDC3O75056 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.75■□□□□ 0.75
SDC3O75056 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SDC3O75056 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.75■□□□□ 0.75
SDC3O75056 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SDC3O75056 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SDC3O75056 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.75■□□□□ 0.75
SDC3O75056 MIR4785-201ENST00000585005 73 ntBASIC19.75■□□□□ 0.75
SDC3O75056 LINC01023-201ENST00000606054 436 ntBASIC19.75■□□□□ 0.75
SDC3O75056 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.75■□□□□ 0.75
SDC3O75056 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SDC3O75056 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SDC3O75056 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.75■□□□□ 0.75
SDC3O75056 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.74■□□□□ 0.75
SDC3O75056 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SDC3O75056 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SDC3O75056 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.74■□□□□ 0.75
SDC3O75056 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.74■□□□□ 0.75
SDC3O75056 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.74■□□□□ 0.75
SDC3O75056 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.74■□□□□ 0.75
SDC3O75056 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.74■□□□□ 0.75
SDC3O75056 RARRES2P10-201ENST00000564312 460 ntBASIC19.74■□□□□ 0.75
SDC3O75056 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC3O75056 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.74■□□□□ 0.75
SDC3O75056 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.74■□□□□ 0.75
SDC3O75056 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.74■□□□□ 0.75
SDC3O75056 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SDC3O75056 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SDC3O75056 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SDC3O75056 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SDC3O75056 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms