Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PRKNO60260 AL391422.3-201ENST00000603791 2761 ntBASIC18.78■□□□□ 0.6
PRKNO60260 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.78■□□□□ 0.6
PRKNO60260 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PRKNO60260 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PRKNO60260 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PRKNO60260 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 FEM1AP1-201ENST00000431297 1995 ntBASIC18.77■□□□□ 0.6
PRKNO60260 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.77■□□□□ 0.6
PRKNO60260 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PRKNO60260 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.77■□□□□ 0.6
PRKNO60260 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PRKNO60260 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
PRKNO60260 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.77■□□□□ 0.6
PRKNO60260 AC060766.5-201ENST00000590539 871 ntBASIC18.77■□□□□ 0.6
PRKNO60260 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PRKNO60260 HLA-B-256ENST00000639848 1089 ntBASIC18.77■□□□□ 0.6
PRKNO60260 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKNO60260 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PRKNO60260 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.77■□□□□ 0.6
PRKNO60260 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PRKNO60260 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PRKNO60260 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PRKNO60260 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PRKNO60260 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PRKNO60260 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 SMG8-203ENST00000578922 2178 ntBASIC18.76■□□□□ 0.59
PRKNO60260 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PRKNO60260 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
PRKNO60260 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PRKNO60260 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PRKNO60260 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.76■□□□□ 0.59
PRKNO60260 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
PRKNO60260 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.76■□□□□ 0.59
PRKNO60260 UNC93B5-201ENST00000530315 699 ntBASIC18.76■□□□□ 0.59
PRKNO60260 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.76■□□□□ 0.59
PRKNO60260 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.76■□□□□ 0.59
PRKNO60260 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.76■□□□□ 0.59
PRKNO60260 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.76■□□□□ 0.59
PRKNO60260 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PRKNO60260 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.76■□□□□ 0.59
PRKNO60260 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 PCDHAC2-203ENST00000615316 3011 ntBASIC18.76■□□□□ 0.59
PRKNO60260 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKNO60260 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
PRKNO60260 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.75■□□□□ 0.59
PRKNO60260 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PRKNO60260 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.75■□□□□ 0.59
PRKNO60260 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.75■□□□□ 0.59
PRKNO60260 PNMA6B-201ENST00000538162 1200 ntBASIC18.75■□□□□ 0.59
PRKNO60260 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PRKNO60260 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PRKNO60260 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PRKNO60260 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 AC092368.3-202ENST00000574180 1591 ntBASIC18.75■□□□□ 0.59
PRKNO60260 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.75■□□□□ 0.59
PRKNO60260 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKNO60260 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PRKNO60260 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PRKNO60260 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PRKNO60260 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PRKNO60260 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.74■□□□□ 0.59
PRKNO60260 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PRKNO60260 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PRKNO60260 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PRKNO60260 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.74■□□□□ 0.59
PRKNO60260 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PRKNO60260 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.74■□□□□ 0.59
PRKNO60260 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.74■□□□□ 0.59
PRKNO60260 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms