Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM38O00635 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM38O00635 RPS2P4-201ENST00000476944 856 ntBASIC20.24■□□□□ 0.83
TRIM38O00635 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM38O00635 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRIM38O00635 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM38O00635 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM38O00635 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TRIM38O00635 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TRIM38O00635 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM38O00635 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TRIM38O00635 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 MCRIP2P1-201ENST00000394346 511 ntBASIC20.23■□□□□ 0.83
TRIM38O00635 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 UNC93B4-201ENST00000505679 747 ntBASIC20.23■□□□□ 0.83
TRIM38O00635 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM38O00635 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM38O00635 AC060766.5-201ENST00000590539 871 ntBASIC20.23■□□□□ 0.83
TRIM38O00635 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM38O00635 GABARAPL3-202ENST00000624044 1851 ntBASIC20.23■□□□□ 0.83
TRIM38O00635 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TRIM38O00635 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM38O00635 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM38O00635 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM38O00635 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM38O00635 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM38O00635 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM38O00635 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM38O00635 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM38O00635 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 AL589743.5-201ENST00000616611 1050 ntBASIC20.22■□□□□ 0.83
TRIM38O00635 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TRIM38O00635 HLA-B-256ENST00000639848 1089 ntBASIC20.22■□□□□ 0.83
TRIM38O00635 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM38O00635 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM38O00635 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM38O00635 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM38O00635 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM38O00635 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM38O00635 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM38O00635 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
TRIM38O00635 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRIM38O00635 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TRIM38O00635 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM38O00635 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM38O00635 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM38O00635 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM38O00635 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRIM38O00635 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM38O00635 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM38O00635 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
TRIM38O00635 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
TRIM38O00635 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM38O00635 KRT18P68-201ENST00000392293 1000 ntBASIC20.2■□□□□ 0.82
TRIM38O00635 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM38O00635 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM38O00635 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms